RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 CUL9Q8IWT3 2517 aa5.37□□□□□ -1.55
CLK3-219ENST00000567805 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.36□□□□□ -1.55
CLK3-219ENST00000567805 TMEM150BA6NC51 233 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 DDX11L8A8MPP1 907 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 BTBD18B2RXH4 712 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 TNFRSF10AO00220 468 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 GRM6O15303 877 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 HOXA2O43364 376 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 NCK2O43639 380 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 GAS2O43903 313 aaKnown RBP5.36□□□□□ -1.55
CLK3-219ENST00000567805 NEMFO60524 1076 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 MAFO75444 373 aaPredicted RBP5.36□□□□□ -1.55
CLK3-219ENST00000567805 DARSP14868 501 aaKnown RBP5.36□□□□□ -1.55
CLK3-219ENST00000567805 ZSCAN20P17040 1043 aaPredicted RBP5.36□□□□□ -1.55
CLK3-219ENST00000567805 KCNQ1P51787 676 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 FAM189BP81408 668 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 HMGN5P82970 282 aaKnown RBP5.36□□□□□ -1.55
CLK3-219ENST00000567805 SPIRE1Q08AE8 756 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 ST3GAL1Q11201 340 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 DRP2Q13474 957 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 COL19A1Q14993 1142 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 EPHA7Q15375 998 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 SAFBQ15424 915 aaKnown RBP eCLIP5.36□□□□□ -1.55
CLK3-219ENST00000567805 CALCRLQ16602 461 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 CSPP1Q1MSJ5 1256 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 LEXMQ3ZCV2 418 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 PAN2Q504Q3 1202 aaKnown RBP5.36□□□□□ -1.55
CLK3-219ENST00000567805 NCAPH2Q6IBW4 605 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 OTUD6AQ7L8S5 288 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 ZNF410Q86VK4 478 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 C4orf19Q8IY42 314 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 DIS3L2Q8IYB7 885 aaKnown RBP5.36□□□□□ -1.55
CLK3-219ENST00000567805 NEK9Q8TD19 979 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 NLRP7Q8WX94 980 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 SLC7A3Q8WY07 619 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 ZSCAN31Q96LW9 406 aaPredicted RBP5.36□□□□□ -1.55
CLK3-219ENST00000567805 SCLT1Q96NL6 688 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 LXNQ9BS40 222 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 GCOM2Q9BZD3 368 aaPredicted RBP5.36□□□□□ -1.55
CLK3-219ENST00000567805 INO80BQ9C086 356 aaPredicted RBP5.36□□□□□ -1.55
CLK3-219ENST00000567805 ZSWIM4Q9H7M6 989 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 UBE2ZQ9H832 354 aaPredicted RBP5.36□□□□□ -1.55
CLK3-219ENST00000567805 ATP6V0A4Q9HBG4 840 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 CYP26B1Q9NR63 512 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 SH2B1Q9NRF2 756 aaPredicted RBP5.36□□□□□ -1.55
CLK3-219ENST00000567805 AAASQ9NRG9 546 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 TMEM161AQ9NX61 479 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 DACT1Q9NYF0 836 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 PCDHA12Q9UN75 941 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 PLAGL2Q9UPG8 496 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 TRIOO75962 3097 aa5.36□□□□□ -1.55
CLK3-219ENST00000567805 TDRD15B5MCY1 1934 aaKnown RBP5.35□□□□□ -1.55
CLK3-219ENST00000567805 A0A087WZ62 844 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 A0A0U1RQF3 1178 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 TBKBP1A7MCY6 615 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 EOMESO95936 686 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 ITGB1P05556 798 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 FGFR1P11362 822 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 IBSPP21815 317 aaPredicted RBP5.35□□□□□ -1.55
CLK3-219ENST00000567805 KCNA5P22460 613 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 SFPQP23246 707 aaKnown RBP eCLIP5.35□□□□□ -1.55
CLK3-219ENST00000567805 YWHABP31946 246 aaKnown RBP5.35□□□□□ -1.55
CLK3-219ENST00000567805 RFC5P40937 340 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 RBM25P49756 843 aaKnown RBP5.35□□□□□ -1.55
CLK3-219ENST00000567805 GATMP50440 423 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 FOSBP53539 338 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 POLGP54098 1239 aaPredicted RBP5.35□□□□□ -1.55
CLK3-219ENST00000567805 NPEPPSP55786 919 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 CYP4A11Q02928 519 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 UBE3AQ05086 875 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 ORC2Q13416 577 aaPredicted RBP5.35□□□□□ -1.55
CLK3-219ENST00000567805 PUS10Q3MIT2 529 aaKnown RBP5.35□□□□□ -1.55
CLK3-219ENST00000567805 TCEAL5Q5H9L2 206 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 SPOUT1Q5T280 376 aaKnown RBP5.35□□□□□ -1.55
CLK3-219ENST00000567805 FAM102BQ5T8I3 360 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 PLA2G4FQ68DD2 849 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 ECHDC2Q86YB7 292 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 RHPN2Q8IUC4 686 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 CCDC83Q8IWF9 413 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 ABI1Q8IZP0 508 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 EFCAB3Q8N7B9 438 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 KLHL23Q8NBE8 558 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 FBXO18Q8NFZ0 1043 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 SPPL3Q8TCT6 385 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 TCP11Q8WWU5 503 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 PSPC1Q8WXF1 523 aaKnown RBP5.35□□□□□ -1.55
CLK3-219ENST00000567805 RSPH1Q8WYR4 309 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 PPP2R3CQ969Q6 453 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 PABPC5Q96DU9 382 aaKnown RBP5.35□□□□□ -1.55
CLK3-219ENST00000567805 DYDC2Q96IM9 177 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 C8orf76Q96K31 380 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 ZNF668Q96K58 619 aaPredicted RBP5.35□□□□□ -1.55
CLK3-219ENST00000567805 CEP170P1Q96L14 293 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 NLRP4Q96MN2 994 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 CASD1Q96PB1 797 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 MTMR9Q96QG7 549 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 KIF2CQ99661 725 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 EIF2AK1Q9BQI3 630 aaKnown RBP5.35□□□□□ -1.55
CLK3-219ENST00000567805 SH2D3AQ9BRG2 576 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 FDXACB1Q9BRP7 624 aaPredicted RBP5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms