RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	ATP2B1	P20020	1258 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	FGFR4	P22455	802 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	YWHAB	P31946	246 aa	Known RBP	7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	MCM7	P33993	719 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	GATM	P50440	423 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	POLG	P54098	1239 aa	Predicted RBP	7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	CYP4A11	Q02928	519 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	RABEP1	Q15276	862 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	ZNF174	Q15697	407 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	TIGD5	Q53EQ6	642 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	XKR9	Q5GH70	373 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	TCEAL5	Q5H9L2	206 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	SPOUT1	Q5T280	376 aa	Known RBP	7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	ECHDC2	Q86YB7	292 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	KSR1	Q8IVT5	923 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	FAM184A	Q8NB25	1140 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	KLHL23	Q8NBE8	558 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	FBXO18	Q8NFZ0	1043 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	SPPL3	Q8TCT6	385 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	TCP11	Q8WWU5	503 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	PRPF31	Q8WWY3	499 aa	Known RBP	7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	TMEM143	Q96AN5	459 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	MTMR9	Q96QG7	549 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	LXN	Q9BS40	222 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	NSUN3	Q9H649	340 aa	Known RBP	7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	DHX33	Q9H6R0	707 aa	Known RBP	7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	UBE2Z	Q9H832	354 aa	Predicted RBP	7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	UPF2	Q9HAU5	1272 aa	Known RBP	7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	ALG13	Q9NP73	1137 aa	Known RBP	7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	AAAS	Q9NRG9	546 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	ANKEF1	Q9NU02	776 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	TYW1	Q9NV66	732 aa	Known RBP	7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	DACT1	Q9NYF0	836 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	WRAP73	Q9P2S5	460 aa	Predicted RBP	7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	PCDHB12	Q9Y5F1	795 aa		7.73	□□□□□ -1.17
SF3B3-209	ENST00000567635	TDRD15	B5MCY1	1934 aa	Known RBP	7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	WNT7A	O00755	349 aa		7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	GAS2	O43903	313 aa	Known RBP	7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	ST18	O60284	1047 aa		7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	LYPLA2	O95372	231 aa		7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	SRGAP2C	P0DJJ0	459 aa		7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	SKI	P12755	728 aa		7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	SFPQ	P23246	707 aa	Known RBP eCLIP	7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	DNAJB1	P25685	340 aa		7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	LAMTOR4	Q0VGL1	99 aa		7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	GNL2	Q13823	731 aa	Known RBP	7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	CSPP1	Q1MSJ5	1256 aa		7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	CATSPER4	Q7RTX7	472 aa		7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	SRGAP1	Q7Z6B7	1085 aa		7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	ABI1	Q8IZP0	508 aa		7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	RNF169	Q8NCN4	708 aa		7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	NEK9	Q8TD19	979 aa		7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	PSPC1	Q8WXF1	523 aa	Known RBP	7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	NLRP4	Q96MN2	994 aa		7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	CASD1	Q96PB1	797 aa		7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	UHRF1	Q96T88	793 aa	Predicted RBP	7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	TMEM117	Q9H0C3	514 aa		7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	TMEM60	Q9H2L4	133 aa		7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	IFT122	Q9HBG6	1241 aa		7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	COL4A3BP	Q9Y5P4	624 aa		7.72	□□□□□ -1.17
SF3B3-209	ENST00000567635	SPATA31C1	P0DKV0	1188 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	LAG3	P18627	525 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	KCNA5	P22460	613 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	U2AF2	P26368	475 aa	Known RBP eCLIP	7.71	□□□□□ -1.18	8e-12	■□□□□ 8.8
SF3B3-209	ENST00000567635	TEC	P42680	631 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	PHKA2	P46019	1235 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	TRAPPC10	P48553	1259 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	UBE3A	Q05086	875 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	POU5F1B	Q06416	359 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	ORC2	Q13416	577 aa	Predicted RBP	7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	CAMK1	Q14012	370 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	MXD4	Q14582	209 aa	Predicted RBP	7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	COL19A1	Q14993	1142 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	EMC2	Q15006	297 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	PUS10	Q3MIT2	529 aa	Known RBP	7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	LEXM	Q3ZCV2	418 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	TTC38	Q5R3I4	469 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	TWF2	Q6IBS0	349 aa	Known RBP	7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	LRRC55	Q6ZSA7	311 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	EP400NL	Q6ZTU2	488 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	ZNF598	Q86UK7	904 aa	Known RBP	7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	FERMT3	Q86UX7	667 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	NOSTRIN	Q8IVI9	506 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	COLGALT1	Q8NBJ5	622 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	POF1B	Q8WVV4	589 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	PPP2R3C	Q969Q6	453 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	PABPC5	Q96DU9	382 aa	Known RBP	7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	MTR	Q99707	1265 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	TRAIP	Q9BWF2	469 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	IGFLR1	Q9H665	355 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	CWH43	Q9H720	699 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	TUFT1	Q9NNX1	390 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	RNF19A	Q9NV58	838 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	PUF60	Q9UHX1	559 aa	Known RBP	7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	NOL7	Q9UMY1	257 aa	Known RBP	7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635	KIF3A	Q9Y496	699 aa		7.71	□□□□□ -1.18
SF3B3-209	ENST00000567635		A0A087WWV3	80 aa		7.7	□□□□□ -1.18
SF3B3-209	ENST00000567635	POTEM	A6NI47	508 aa		7.7	□□□□□ -1.18
SF3B3-209	ENST00000567635	ZNF623	O75123	536 aa		7.7	□□□□□ -1.18
SF3B3-209	ENST00000567635	DGAT1	O75907	488 aa		7.7	□□□□□ -1.18

Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms