RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 CHST12Q9NRB3 414 aa23.17■■□□□ 1.3
CLN3-219ENST00000565778 BMP2KQ9NSY1 1161 aaPredicted RBP23.17■■□□□ 1.3
CLN3-219ENST00000565778 RALGAPA2Q2PPJ7 1873 aa23.17■■□□□ 1.3
CLN3-219ENST00000565778 A0A0U1RQF3 1178 aa23.16■■□□□ 1.3
CLN3-219ENST00000565778 EOMESO95936 686 aa23.16■■□□□ 1.3
CLN3-219ENST00000565778 SRGAP2CP0DJJ0 459 aa23.16■■□□□ 1.3
CLN3-219ENST00000565778 DNAJB1P25685 340 aa23.16■■□□□ 1.3
CLN3-219ENST00000565778 LEXMQ3ZCV2 418 aa23.16■■□□□ 1.3
CLN3-219ENST00000565778 CATSPER4Q7RTX7 472 aa23.16■■□□□ 1.3
CLN3-219ENST00000565778 FBXO18Q8NFZ0 1043 aa23.16■■□□□ 1.3
CLN3-219ENST00000565778 PSPC1Q8WXF1 523 aaKnown RBP23.16■■□□□ 1.3
CLN3-219ENST00000565778 PABPC5Q96DU9 382 aaKnown RBP23.16■■□□□ 1.3
CLN3-219ENST00000565778 CASD1Q96PB1 797 aa23.16■■□□□ 1.3
CLN3-219ENST00000565778 HSD17B14Q9BPX1 270 aa23.16■■□□□ 1.3
CLN3-219ENST00000565778 FOXP1Q9H334 677 aaPredicted RBP23.16■■□□□ 1.3
CLN3-219ENST00000565778 IGFLR1Q9H665 355 aa23.16■■□□□ 1.3
CLN3-219ENST00000565778 CLDND1Q9NY35 253 aa23.16■■□□□ 1.3
CLN3-219ENST00000565778 COL4A3BPQ9Y5P4 624 aa23.16■■□□□ 1.3
CLN3-219ENST00000565778 TCF20Q9UGU0 1960 aaKnown RBP23.15■■□□□ 1.3
CLN3-219ENST00000565778 H3BQ06 376 aaPredicted RBP23.15■■□□□ 1.3
CLN3-219ENST00000565778 CAMK1Q14012 370 aa23.15■■□□□ 1.3
CLN3-219ENST00000565778 GADD45GIP1Q8TAE8 222 aaPredicted RBP23.15■■□□□ 1.3
CLN3-219ENST00000565778 MICAL1Q8TDZ2 1067 aa23.15■■□□□ 1.3
CLN3-219ENST00000565778 TCP11Q8WWU5 503 aa23.15■■□□□ 1.3
CLN3-219ENST00000565778 TMEM60Q9H2L4 133 aa23.15■■□□□ 1.3
CLN3-219ENST00000565778 UPF2Q9HAU5 1272 aaKnown RBP23.15■■□□□ 1.3
CLN3-219ENST00000565778 ASAP2O43150 1006 aa23.14■■□□□ 1.29
CLN3-219ENST00000565778 GAS2O43903 313 aaKnown RBP23.14■■□□□ 1.29
CLN3-219ENST00000565778 LAMTOR4Q0VGL1 99 aa23.14■■□□□ 1.29
CLN3-219ENST00000565778 HYAL1Q12794 435 aa23.14■■□□□ 1.29
CLN3-219ENST00000565778 RABEP1Q15276 862 aa23.14■■□□□ 1.29
CLN3-219ENST00000565778 ZNF174Q15697 407 aa23.14■■□□□ 1.29
CLN3-219ENST00000565778 TWF2Q6IBS0 349 aaKnown RBP23.14■■□□□ 1.29
CLN3-219ENST00000565778 THNSL1Q8IYQ7 743 aa23.14■■□□□ 1.29
CLN3-219ENST00000565778 COLGALT1Q8NBJ5 622 aa23.14■■□□□ 1.29
CLN3-219ENST00000565778 NEK9Q8TD19 979 aa23.14■■□□□ 1.29
CLN3-219ENST00000565778 PPP2R3CQ969Q6 453 aa23.14■■□□□ 1.29
CLN3-219ENST00000565778 CWH43Q9H720 699 aa23.14■■□□□ 1.29
CLN3-219ENST00000565778 RNF19AQ9NV58 838 aa23.14■■□□□ 1.29
CLN3-219ENST00000565778 HCSTQ9UBK5 93 aa23.14■■□□□ 1.29
CLN3-219ENST00000565778 PIN4Q9Y237 131 aaKnown RBP23.14■■□□□ 1.29
CLN3-219ENST00000565778 SPTBN5Q9NRC6 3674 aaKnown RBP23.13■■□□□ 1.29
CLN3-219ENST00000565778 ST18O60284 1047 aa23.13■■□□□ 1.29
CLN3-219ENST00000565778 FGF18O76093 207 aa23.13■■□□□ 1.29
CLN3-219ENST00000565778 LAG3P18627 525 aa23.13■■□□□ 1.29
CLN3-219ENST00000565778 EMC2Q15006 297 aa23.13■■□□□ 1.29
CLN3-219ENST00000565778 CSPP1Q1MSJ5 1256 aa23.13■■□□□ 1.29
CLN3-219ENST00000565778 LRRC55Q6ZSA7 311 aa23.13■■□□□ 1.29
CLN3-219ENST00000565778 CCDC43Q96MW1 224 aaKnown RBP23.13■■□□□ 1.29
CLN3-219ENST00000565778 MTRQ99707 1265 aa23.13■■□□□ 1.29
CLN3-219ENST00000565778 IFT122Q9HBG6 1241 aa23.13■■□□□ 1.29
CLN3-219ENST00000565778 ANKEF1Q9NU02 776 aa23.13■■□□□ 1.29
CLN3-219ENST00000565778 A0A087WWV3 80 aa23.12■■□□□ 1.29
CLN3-219ENST00000565778 LYPLA2O95372 231 aa23.12■■□□□ 1.29
CLN3-219ENST00000565778 SKIP12755 728 aa23.12■■□□□ 1.29
CLN3-219ENST00000565778 IRS1P35568 1242 aa23.12■■□□□ 1.29
CLN3-219ENST00000565778 TECP42680 631 aa23.12■■□□□ 1.29
CLN3-219ENST00000565778 PHKA2P46019 1235 aa23.12■■□□□ 1.29
CLN3-219ENST00000565778 PUS10Q3MIT2 529 aaKnown RBP23.12■■□□□ 1.29
CLN3-219ENST00000565778 PTCRAQ6ISU1 281 aaPredicted RBP23.12■■□□□ 1.29
CLN3-219ENST00000565778 SRGAP1Q7Z6B7 1085 aa23.12■■□□□ 1.29
CLN3-219ENST00000565778 HELQQ8TDG4 1101 aa23.12■■□□□ 1.29
CLN3-219ENST00000565778 POTEMA6NI47 508 aa23.11■■□□□ 1.29
CLN3-219ENST00000565778 GTF2F1P35269 517 aaKnown RBP eCLIP23.11■■□□□ 1.29
CLN3-219ENST00000565778 UBE3AQ05086 875 aa23.11■■□□□ 1.29
CLN3-219ENST00000565778 COL19A1Q14993 1142 aa23.11■■□□□ 1.29
CLN3-219ENST00000565778 LONRF3Q496Y0 759 aa23.11■■□□□ 1.29
CLN3-219ENST00000565778 CLLU1OSQ5K130 101 aa23.11■■□□□ 1.29
CLN3-219ENST00000565778 ZNF598Q86UK7 904 aaKnown RBP23.11■■□□□ 1.29
CLN3-219ENST00000565778 FERMT3Q86UX7 667 aa23.11■■□□□ 1.29
CLN3-219ENST00000565778 NOSTRINQ8IVI9 506 aa23.11■■□□□ 1.29
CLN3-219ENST00000565778 RNF149Q8NC42 400 aa23.11■■□□□ 1.29
CLN3-219ENST00000565778 PIGOQ8TEQ8 1089 aa23.11■■□□□ 1.29
CLN3-219ENST00000565778 TRAIPQ9BWF2 469 aa23.11■■□□□ 1.29
CLN3-219ENST00000565778 PUF60Q9UHX1 559 aaKnown RBP23.11■■□□□ 1.29
CLN3-219ENST00000565778 XRCC6P12956 609 aaKnown RBP eCLIP23.1■■□□□ 1.29
CLN3-219ENST00000565778 MXD4Q14582 209 aaPredicted RBP23.1■■□□□ 1.29
CLN3-219ENST00000565778 CTC1Q2NKJ3 1217 aa23.1■■□□□ 1.29
CLN3-219ENST00000565778 KCNT2Q6UVM3 1135 aa23.1■■□□□ 1.29
CLN3-219ENST00000565778 RBM23Q86U06 439 aaKnown RBP23.1■■□□□ 1.29
CLN3-219ENST00000565778 LRRC43Q8N309 656 aa23.1■■□□□ 1.29
CLN3-219ENST00000565778 NOL7Q9UMY1 257 aaKnown RBP23.1■■□□□ 1.29
CLN3-219ENST00000565778 GRXCR2A6NFK2 248 aa23.09■■□□□ 1.29
CLN3-219ENST00000565778 DGAT1O75907 488 aa23.09■■□□□ 1.29
CLN3-219ENST00000565778 OR52Z1P0C646 297 aa23.09■■□□□ 1.29
CLN3-219ENST00000565778 ATF7P17544 494 aaPredicted RBP23.09■■□□□ 1.29
CLN3-219ENST00000565778 LTBRP36941 435 aa23.09■■□□□ 1.29
CLN3-219ENST00000565778 KRT17Q04695 432 aa23.09■■□□□ 1.29
CLN3-219ENST00000565778 ORC2Q13416 577 aaPredicted RBP23.09■■□□□ 1.29
CLN3-219ENST00000565778 ADAM15Q13444 863 aa23.09■■□□□ 1.29
CLN3-219ENST00000565778 TTC38Q5R3I4 469 aa23.09■■□□□ 1.29
CLN3-219ENST00000565778 ADGRD2Q7Z7M1 963 aa23.09■■□□□ 1.29
CLN3-219ENST00000565778 ZNF558Q96NG5 402 aa23.09■■□□□ 1.29
CLN3-219ENST00000565778 MINDY3Q9H8M7 445 aa23.09■■□□□ 1.29
CLN3-219ENST00000565778 TLR9Q9NR96 1032 aa23.09■■□□□ 1.29
CLN3-219ENST00000565778 FAM105AQ9NUU6 356 aa23.09■■□□□ 1.29
CLN3-219ENST00000565778 TTC28Q96AY4 2481 aa23.09■■□□□ 1.29
CLN3-219ENST00000565778 LINC01565O15544 149 aa23.08■■□□□ 1.29
CLN3-219ENST00000565778 SPATA31C1P0DKV0 1188 aa23.08■■□□□ 1.29
CLN3-219ENST00000565778 IL9P15248 144 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms