RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 DGKIO75912 1065 aa14.91□□□□□ -0.02
CLK3-216ENST00000564468 POU3F3P20264 500 aaPredicted RBP14.91□□□□□ -0.02
CLK3-216ENST00000564468 CCT6AP40227 531 aaKnown RBP14.91□□□□□ -0.02
CLK3-216ENST00000564468 TFDP1Q14186 410 aa14.91□□□□□ -0.02
CLK3-216ENST00000564468 BTG3Q14201 252 aaPredicted RBP14.91□□□□□ -0.02
CLK3-216ENST00000564468 ADGRE1Q14246 886 aa14.91□□□□□ -0.02
CLK3-216ENST00000564468 KRT79Q5XKE5 535 aa14.91□□□□□ -0.02
CLK3-216ENST00000564468 ARL6IP4Q66PJ3 421 aaKnown RBP14.91□□□□□ -0.02
CLK3-216ENST00000564468 SRGAP1Q7Z6B7 1085 aa14.91□□□□□ -0.02
CLK3-216ENST00000564468 HSCBQ8IWL3 235 aa14.91□□□□□ -0.02
CLK3-216ENST00000564468 CMTR2Q8IYT2 770 aaKnown RBP14.91□□□□□ -0.02
CLK3-216ENST00000564468 IGSF22Q8N9C0 903 aa14.91□□□□□ -0.02
CLK3-216ENST00000564468 PIGOQ8TEQ8 1089 aa14.91□□□□□ -0.02
CLK3-216ENST00000564468 PRPF31Q8WWY3 499 aaKnown RBP14.91□□□□□ -0.02
CLK3-216ENST00000564468 TMEM143Q96AN5 459 aa14.91□□□□□ -0.02
CLK3-216ENST00000564468 ZNF689Q96CS4 500 aaPredicted RBP14.91□□□□□ -0.02
CLK3-216ENST00000564468 ZNF668Q96K58 619 aaPredicted RBP14.91□□□□□ -0.02
CLK3-216ENST00000564468 ELAC1Q9H777 363 aaKnown RBP14.91□□□□□ -0.02
CLK3-216ENST00000564468 LMCD1Q9NZU5 365 aa14.91□□□□□ -0.02
CLK3-216ENST00000564468 RAPGEFL1Q9UHV5 662 aa14.91□□□□□ -0.02
CLK3-216ENST00000564468 COL4A4P53420 1690 aaPredicted RBP14.9□□□□□ -0.02
CLK3-216ENST00000564468 CHD7Q9P2D1 2997 aa14.9□□□□□ -0.02
CLK3-216ENST00000564468 HOXA2O43364 376 aa14.9□□□□□ -0.02
CLK3-216ENST00000564468 MGEA5O60502 916 aa14.9□□□□□ -0.02
CLK3-216ENST00000564468 ARHGEF15O94989 841 aa14.9□□□□□ -0.02
CLK3-216ENST00000564468 SKIP12755 728 aa14.9□□□□□ -0.02
CLK3-216ENST00000564468 PDIA4P13667 645 aaKnown RBP14.9□□□□□ -0.02
CLK3-216ENST00000564468 ATP2C1P98194 919 aaPredicted RBP14.9□□□□□ -0.02
CLK3-216ENST00000564468 POU5F1BQ06416 359 aa14.9□□□□□ -0.02
CLK3-216ENST00000564468 LAMTOR4Q0VGL1 99 aa14.9□□□□□ -0.02
CLK3-216ENST00000564468 DSC3Q14574 896 aa14.9□□□□□ -0.02
CLK3-216ENST00000564468 PCBP1Q15365 356 aaKnown RBP eCLIP14.9□□□□□ -0.02
CLK3-216ENST00000564468 SKIV2LQ15477 1246 aaKnown RBP14.9□□□□□ -0.02
CLK3-216ENST00000564468 FERMT3Q86UX7 667 aa14.9□□□□□ -0.02
CLK3-216ENST00000564468 CRIPAKQ8N1N5 446 aa14.9□□□□□ -0.02
CLK3-216ENST00000564468 MCPH1Q8NEM0 835 aa14.9□□□□□ -0.02
CLK3-216ENST00000564468 FBXO22Q8NEZ5 403 aa14.9□□□□□ -0.02
CLK3-216ENST00000564468 SNX29Q8TEQ0 813 aa14.9□□□□□ -0.02
CLK3-216ENST00000564468 BMP2KQ9NSY1 1161 aaPredicted RBP14.9□□□□□ -0.02
CLK3-216ENST00000564468 TMEM161AQ9NX61 479 aa14.9□□□□□ -0.02
CLK3-216ENST00000564468 ARIH1Q9Y4X5 557 aaPredicted RBP14.9□□□□□ -0.02
CLK3-216ENST00000564468 KIAA1671Q9BY89 1806 aa14.89□□□□□ -0.03
CLK3-216ENST00000564468 ARHGEF35A5YM69 484 aa14.89□□□□□ -0.03
CLK3-216ENST00000564468 RB1P06400 928 aa14.89□□□□□ -0.03
CLK3-216ENST00000564468 SRGAP2CP0DJJ0 459 aa14.89□□□□□ -0.03
CLK3-216ENST00000564468 PHKA2P46019 1235 aa14.89□□□□□ -0.03
CLK3-216ENST00000564468 FAM189BP81408 668 aa14.89□□□□□ -0.03
CLK3-216ENST00000564468 NCBP1Q09161 790 aaKnown RBP14.89□□□□□ -0.03
CLK3-216ENST00000564468 POTEGQ6S5H5 508 aa14.89□□□□□ -0.03
CLK3-216ENST00000564468 CATSPER4Q7RTX7 472 aa14.89□□□□□ -0.03
CLK3-216ENST00000564468 KSR1Q8IVT5 923 aa14.89□□□□□ -0.03
CLK3-216ENST00000564468 TMEM192Q8IY95 271 aa14.89□□□□□ -0.03
CLK3-216ENST00000564468 MICALL1Q8N3F8 863 aa14.89□□□□□ -0.03
CLK3-216ENST00000564468 KCTD17Q8N5Z5 321 aa14.89□□□□□ -0.03
CLK3-216ENST00000564468 RNF149Q8NC42 400 aa14.89□□□□□ -0.03
CLK3-216ENST00000564468 RC3H2Q9HBD1 1191 aaKnown RBP14.89□□□□□ -0.03
CLK3-216ENST00000564468 MTUS1Q9ULD2 1270 aa14.89□□□□□ -0.03
CLK3-216ENST00000564468 HCN4Q9Y3Q4 1203 aa14.89□□□□□ -0.03
CLK3-216ENST00000564468 TRANK1O15050 2925 aa14.89□□□□□ -0.03
CLK3-216ENST00000564468 RFXAPO00287 272 aa14.88□□□□□ -0.03
CLK3-216ENST00000564468 USO1O60763 962 aaKnown RBP14.88□□□□□ -0.03
CLK3-216ENST00000564468 EOMESO95936 686 aa14.88□□□□□ -0.03
CLK3-216ENST00000564468 HSP90AA1P07900 732 aaKnown RBP14.88□□□□□ -0.03
CLK3-216ENST00000564468 SYT1P21579 422 aa14.88□□□□□ -0.03
CLK3-216ENST00000564468 IBSPP21815 317 aaPredicted RBP14.88□□□□□ -0.03
CLK3-216ENST00000564468 GRB10Q13322 594 aa14.88□□□□□ -0.03
CLK3-216ENST00000564468 EPC2Q52LR7 807 aa14.88□□□□□ -0.03
CLK3-216ENST00000564468 RSPH1Q8WYR4 309 aa14.88□□□□□ -0.03
CLK3-216ENST00000564468 CLP1Q92989 425 aaKnown RBP14.88□□□□□ -0.03
CLK3-216ENST00000564468 C17orf80Q9BSJ5 609 aa14.88□□□□□ -0.03
CLK3-216ENST00000564468 TRAIPQ9BWF2 469 aa14.88□□□□□ -0.03
CLK3-216ENST00000564468 IFT122Q9HBG6 1241 aa14.88□□□□□ -0.03
CLK3-216ENST00000564468 XPNPEP1Q9NQW7 623 aa14.88□□□□□ -0.03
CLK3-216ENST00000564468 KIAA1024Q9UPX6 916 aa14.88□□□□□ -0.03
CLK3-216ENST00000564468 DNM3Q9UQ16 869 aa14.88□□□□□ -0.03
CLK3-216ENST00000564468 A0A0U1RQF3 1178 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 EPOPA6NHQ4 379 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 RBAK-RBAKDNI3L0D1 243 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 CSDE1O75534 798 aaKnown RBP14.87□□□□□ -0.03
CLK3-216ENST00000564468 ERLIN2O94905 339 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 BMP1P13497 986 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 FGFR4P22455 802 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 AXLP30530 894 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 CTNNB1P35222 781 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 ARL2P36404 184 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 BMPR1AP36894 532 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 PTPROQ16827 1216 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 NAALADL2Q58DX5 795 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 TWF2Q6IBS0 349 aaKnown RBP14.87□□□□□ -0.03
CLK3-216ENST00000564468 ECHDC2Q86YB7 292 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 IFNLR1Q8IU57 520 aaPredicted RBP14.87□□□□□ -0.03
CLK3-216ENST00000564468 ABI1Q8IZP0 508 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 GDPD5Q8WTR4 605 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 AK8Q96MA6 479 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 PLVAPQ9BX97 442 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 NT5C3AQ9H0P0 336 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 ZSCAN16Q9H4T2 348 aaPredicted RBP14.87□□□□□ -0.03
CLK3-216ENST00000564468 AAASQ9NRG9 546 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 DDX19AQ9NUU7 478 aaKnown RBP14.87□□□□□ -0.03
CLK3-216ENST00000564468 PIN4Q9Y237 131 aaKnown RBP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms