RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 TMOD1P28289 359 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 ANTXR2P58335 489 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 RNASELQ05823 741 aaKnown RBP8.31□□□□□ -1.08
VPS4A-203ENST00000564399 LETM2Q2VYF4 491 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 LONRF3Q496Y0 759 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 EFCAB12Q6NXP0 572 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 CASC1Q6TDU7 716 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 ZNF598Q86UK7 904 aaKnown RBP8.31□□□□□ -1.08
VPS4A-203ENST00000564399 CHD1LQ86WJ1 897 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 TMEM173Q86WV6 379 aaPredicted RBP8.31□□□□□ -1.08
VPS4A-203ENST00000564399 RAB11FIP4Q86YS3 637 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 RSAD2Q8WXG1 361 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 BBXQ8WY36 941 aaPredicted RBP8.31□□□□□ -1.08
VPS4A-203ENST00000564399 IGSF21Q96ID5 467 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 EMILIN2Q9BXX0 1053 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 GBP3Q9H0R5 595 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 DACT1Q9NYF0 836 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 CEP131Q9UPN4 1083 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 DMDP11532 3685 aa8.31□□□□□ -1.08
VPS4A-203ENST00000564399 MEIS1O00470 390 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 KINO60870 393 aaKnown RBP8.3□□□□□ -1.08
VPS4A-203ENST00000564399 FOSP01100 380 aaPredicted RBP8.3□□□□□ -1.08
VPS4A-203ENST00000564399 FGFR4P22455 802 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 NAPAP54920 295 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 PTH1RQ03431 593 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 PTPN14Q15678 1187 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 DIEXFQ68CQ4 756 aaKnown RBP8.3□□□□□ -1.08
VPS4A-203ENST00000564399 C15orf39Q6ZRI6 1047 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 PLA2G4DQ86XP0 818 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 C1orf210Q8IVY1 113 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 TMTC2Q8N394 836 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 SLC44A3Q8N4M1 653 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 LRRC71Q8N4P6 559 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 NLRP7Q8WX94 980 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 RUFY2Q8WXA3 655 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 STAMQ92783 540 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 KLHL5Q96PQ7 755 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 ANO3Q9BYT9 981 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 ADAMTS10Q9H324 1103 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 RWDD1Q9H446 243 aaPredicted RBP8.3□□□□□ -1.08
VPS4A-203ENST00000564399 NRDE2Q9H7Z3 1164 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 LY9Q9HBG7 655 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 NCDNQ9UBB6 729 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 INPP5FQ9Y2H2 1132 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 SIT1Q9Y3P8 196 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 TAF6LQ9Y6J9 622 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 MTCL1Q9Y4B5 1905 aaKnown RBP8.3□□□□□ -1.08
VPS4A-203ENST00000564399 BAHCC1Q9P281 2608 aa8.3□□□□□ -1.08
VPS4A-203ENST00000564399 RALGAPA1Q6GYQ0 2036 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 CCDC195A0A1B0GUA6 201 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 PRC1O43663 620 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 N4BP1O75113 896 aaKnown RBP8.29□□□□□ -1.08
VPS4A-203ENST00000564399 CSDE1O75534 798 aaKnown RBP8.29□□□□□ -1.08
VPS4A-203ENST00000564399 PSAPP07602 524 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 GALTP07902 379 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 CNPP09543 421 aaKnown RBP8.29□□□□□ -1.08
VPS4A-203ENST00000564399 CALM1P0DP23 149 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 CALM2P0DP24 149 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 CALM3P0DP25 149 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 MYBP10242 640 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 SRFP11831 508 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 DARSP14868 501 aaKnown RBP8.29□□□□□ -1.08
VPS4A-203ENST00000564399 SDHBP21912 280 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 CLCN4P51793 760 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 ADCY7P51828 1080 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 TWF2Q6IBS0 349 aaKnown RBP8.29□□□□□ -1.08
VPS4A-203ENST00000564399 PHLDB3Q6NSJ2 640 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 ELMSAN1Q6PJG2 1045 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 GLB1LQ6UWU2 654 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 SMC5Q8IY18 1101 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 MB21D2Q8IYB1 491 aaPredicted RBP8.29□□□□□ -1.08
VPS4A-203ENST00000564399 ZNF710Q8N1W2 664 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 GPR152Q8TDT2 470 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 BCL7CQ8WUZ0 217 aaPredicted RBP8.29□□□□□ -1.08
VPS4A-203ENST00000564399 LPPQ93052 612 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 FAM167AQ96KS9 214 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 RIC8AQ9NPQ8 531 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 ARHGEF3Q9NR81 526 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 MRPL17Q9NRX2 175 aaKnown RBP8.29□□□□□ -1.08
VPS4A-203ENST00000564399 TBC1D13Q9NVG8 400 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 GABBR1Q9UBS5 961 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 SAMM50Q9Y512 469 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 MAFBQ9Y5Q3 323 aaPredicted RBP8.29□□□□□ -1.08
VPS4A-203ENST00000564399 SDK1Q7Z5N4 2213 aa8.29□□□□□ -1.08
VPS4A-203ENST00000564399 F5P12259 2224 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 IPO5O00410 1097 aaKnown RBP8.28□□□□□ -1.08
VPS4A-203ENST00000564399 C2CD2LO14523 706 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 INPPL1O15357 1258 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 DHX15O43143 795 aaKnown RBP8.28□□□□□ -1.08
VPS4A-203ENST00000564399 SKIP12755 728 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 PHKA2P46019 1235 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 SLC11A1P49279 550 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 GPC3P51654 580 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 AK2P54819 239 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 NUCB1Q02818 461 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 NOMO2Q5JPE7 1267 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 VARS2Q5ST30 1063 aaKnown RBP8.28□□□□□ -1.08
VPS4A-203ENST00000564399 KIAA0319Q5VV43 1072 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 WWC2Q6AWC2 1192 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 ZNF746Q6NUN9 644 aaPredicted RBP8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms