RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 SCN9AQ15858 1988 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 ARHGEF35A5YM69 484 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 IPO5O00410 1097 aaKnown RBP14.64□□□□□ -0.07
CLK3-215ENST00000564353 CIITAP33076 1130 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 SOX5P35711 763 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 PRELPP51888 382 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 MYL7Q01449 175 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 GLE1Q53GS7 698 aaKnown RBP14.64□□□□□ -0.07
CLK3-215ENST00000564353 UBAP2Q5T6F2 1119 aaKnown RBP14.64□□□□□ -0.07
CLK3-215ENST00000564353 DCAF12L1Q5VU92 463 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.64□□□□□ -0.07
CLK3-215ENST00000564353 POLR3CQ9BUI4 534 aaPredicted RBP14.64□□□□□ -0.07
CLK3-215ENST00000564353 METTL14Q9HCE5 456 aaKnown RBP14.64□□□□□ -0.07
CLK3-215ENST00000564353 ERVK-5Q9HDB9 667 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 COG5Q9UP83 839 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 SHOX2O60902 331 aaPredicted RBP14.64□□□□□ -0.07
CLK3-215ENST00000564353 NR1D1P20393 614 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 SP4Q02446 784 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 ODF2Q5BJF6 829 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 CC2D2BQ6DHV5 1058 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 MOXD1Q6UVY6 613 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 ARHGEF19Q8IW93 802 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 CCDC127Q96BQ5 260 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 BORCS6Q96GS4 357 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 POP1Q99575 1024 aaKnown RBP14.64□□□□□ -0.07
CLK3-215ENST00000564353 GPR88Q9GZN0 384 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 COL20A1Q9P218 1284 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 USP20Q9Y2K6 914 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 FAM169AQ9Y6X4 670 aa14.64□□□□□ -0.07
CLK3-215ENST00000564353 EBAG9O00559 213 aa14.63□□□□□ -0.07
CLK3-215ENST00000564353 PPP1R12BO60237 982 aaPredicted RBP14.63□□□□□ -0.07
CLK3-215ENST00000564353 ITGB5P18084 799 aa14.63□□□□□ -0.07
CLK3-215ENST00000564353 TNFAIP3P21580 790 aa14.63□□□□□ -0.07
CLK3-215ENST00000564353 LDHDQ86WU2 507 aa14.63□□□□□ -0.07
CLK3-215ENST00000564353 DAW1Q8N136 415 aa14.63□□□□□ -0.07
CLK3-215ENST00000564353 ZNF277Q9NRM2 450 aaPredicted RBP14.63□□□□□ -0.07
CLK3-215ENST00000564353 SERPINA10Q9UK55 444 aa14.63□□□□□ -0.07
CLK3-215ENST00000564353 ATP8A1Q9Y2Q0 1164 aa14.63□□□□□ -0.07
CLK3-215ENST00000564353 EMSYQ7Z589 1322 aa14.63□□□□□ -0.07
CLK3-215ENST00000564353 CYP3A4P08684 503 aa14.63□□□□□ -0.07
CLK3-215ENST00000564353 OLIG1Q8TAK6 271 aa14.63□□□□□ -0.07
CLK3-215ENST00000564353 SCFD2Q8WU76 684 aa14.63□□□□□ -0.07
CLK3-215ENST00000564353 CTNNBL1Q8WYA6 563 aaPredicted RBP14.63□□□□□ -0.07
CLK3-215ENST00000564353 ARHGEF10LQ9HCE6 1279 aa14.63□□□□□ -0.07
CLK3-215ENST00000564353 RNF14Q9UBS8 474 aa14.63□□□□□ -0.07
CLK3-215ENST00000564353 TMEM59LQ9UK28 342 aa14.63□□□□□ -0.07
CLK3-215ENST00000564353 LTBP1Q14766 1721 aa14.62□□□□□ -0.07
CLK3-215ENST00000564353 FOCADQ5VW36 1801 aa14.62□□□□□ -0.07
CLK3-215ENST00000564353 KRT13P13646 458 aa14.62□□□□□ -0.07
CLK3-215ENST00000564353 PPP3CAQ08209 521 aa14.62□□□□□ -0.07
CLK3-215ENST00000564353 PLA2G4FQ68DD2 849 aa14.62□□□□□ -0.07
CLK3-215ENST00000564353 FOXR2Q6PJQ5 311 aa14.62□□□□□ -0.07
CLK3-215ENST00000564353 PADI6Q6TGC4 694 aa14.62□□□□□ -0.07
CLK3-215ENST00000564353 ALG3Q92685 438 aa14.62□□□□□ -0.07
CLK3-215ENST00000564353 KRT35Q92764 455 aa14.62□□□□□ -0.07
CLK3-215ENST00000564353 OLFML3Q9NRN5 406 aa14.62□□□□□ -0.07
CLK3-215ENST00000564353 AMFRQ9UKV5 643 aa14.62□□□□□ -0.07
CLK3-215ENST00000564353 BZW2Q9Y6E2 419 aaKnown RBP14.62□□□□□ -0.07
CLK3-215ENST00000564353 ANKRD31Q8N7Z5 1873 aa14.62□□□□□ -0.07
CLK3-215ENST00000564353 EIF2AK2P19525 551 aaKnown RBP14.62□□□□□ -0.07
CLK3-215ENST00000564353 INPP5BP32019 993 aa14.62□□□□□ -0.07
CLK3-215ENST00000564353 DHX9Q08211 1270 aaKnown RBP14.62□□□□□ -0.07
CLK3-215ENST00000564353 BMT2Q1RMZ1 405 aa14.62□□□□□ -0.07
CLK3-215ENST00000564353 NSMFQ6X4W1 530 aa14.62□□□□□ -0.07
CLK3-215ENST00000564353 SAAL1Q96ER3 474 aa14.62□□□□□ -0.07
CLK3-215ENST00000564353 E7EVH7 732 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 MYCLP12524 364 aaPredicted RBP14.61□□□□□ -0.07
CLK3-215ENST00000564353 ALAS1P13196 640 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 FERP16591 822 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 LSP1P33241 339 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 PRKCIP41743 596 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 NPEPPSP55786 919 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 CORO7P57737 925 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 EPC2Q52LR7 807 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 C2CD6Q53TS8 623 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 MYCBPQ99417 103 aaPredicted RBP14.61□□□□□ -0.07
CLK3-215ENST00000564353 ISCUQ9H1K1 167 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 TMOD2Q9NZR1 351 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 CTTNBP2NLQ9P2B4 639 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 CCPG1Q9ULG6 757 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 SIPA1L1O43166 1804 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 SLC16A4O15374 487 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 SLC16A3O15427 465 aaKnown RBP14.61□□□□□ -0.07
CLK3-215ENST00000564353 MESDQ14696 234 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 MIER3Q7Z3K6 550 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 SLC5A5Q92911 643 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 ATP6V1G3Q96LB4 118 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 KCNH7Q9NS40 1196 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 APEX2Q9UBZ4 518 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 FZD1Q9UP38 647 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 PTPN22Q9Y2R2 807 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 SNX24Q9Y343 169 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 TLDC2A0PJX2 215 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 ZBTB48P10074 688 aaPredicted RBP14.61□□□□□ -0.07
CLK3-215ENST00000564353 SSTR3P32745 418 aaPredicted RBP14.61□□□□□ -0.07
CLK3-215ENST00000564353 HDLBPQ00341 1268 aaKnown RBP14.61□□□□□ -0.07
CLK3-215ENST00000564353 MAP2K1Q02750 393 aaPredicted RBP14.61□□□□□ -0.07
CLK3-215ENST00000564353 BFSP1Q12934 665 aa14.61□□□□□ -0.07
CLK3-215ENST00000564353 IFI16Q16666 785 aaKnown RBP14.61□□□□□ -0.07
CLK3-215ENST00000564353 NBPF9Q3BBW0 867 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms