RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 LARSQ9P2J5 1176 aaKnown RBP18.33■□□□□ 0.52
VPS4A-202ENST00000562754 SEL1LQ9UBV2 794 aa18.33■□□□□ 0.52
VPS4A-202ENST00000562754 GDAQ9Y2T3 454 aa18.33■□□□□ 0.52
VPS4A-202ENST00000562754 CD4P01730 458 aa18.32■□□□□ 0.52
VPS4A-202ENST00000562754 NMT1P30419 496 aaKnown RBP18.32■□□□□ 0.52
VPS4A-202ENST00000562754 NAMPTP43490 491 aa18.32■□□□□ 0.52
VPS4A-202ENST00000562754 GPC3P51654 580 aa18.32■□□□□ 0.52
VPS4A-202ENST00000562754 CASP5P51878 434 aa18.32■□□□□ 0.52
VPS4A-202ENST00000562754 NCKAP1LP55160 1127 aa18.32■□□□□ 0.52
VPS4A-202ENST00000562754 TMEM62Q0P6H9 643 aa18.32■□□□□ 0.52
VPS4A-202ENST00000562754 STK4Q13043 487 aa18.32■□□□□ 0.52
VPS4A-202ENST00000562754 DMP1Q13316 513 aaPredicted RBP18.32■□□□□ 0.52
VPS4A-202ENST00000562754 MXD4Q14582 209 aaPredicted RBP18.32■□□□□ 0.52
VPS4A-202ENST00000562754 LRRC26Q2I0M4 334 aa18.32■□□□□ 0.52
VPS4A-202ENST00000562754 SMYD4Q8IYR2 804 aaPredicted RBP18.32■□□□□ 0.52
VPS4A-202ENST00000562754 SPIRE2Q8WWL2 714 aa18.32■□□□□ 0.52
VPS4A-202ENST00000562754 CCDC47Q96A33 483 aaKnown RBP18.32■□□□□ 0.52
VPS4A-202ENST00000562754 IFT74Q96LB3 600 aa18.32■□□□□ 0.52
VPS4A-202ENST00000562754 GZF1Q9H116 711 aaPredicted RBP18.32■□□□□ 0.52
VPS4A-202ENST00000562754 SLC39A2Q9NP94 309 aa18.32■□□□□ 0.52
VPS4A-202ENST00000562754 NOD1Q9Y239 953 aa18.32■□□□□ 0.52
VPS4A-202ENST00000562754 MROH7Q68CQ1 1323 aa18.31■□□□□ 0.52
VPS4A-202ENST00000562754 LRRIQ4A6NIV6 560 aa18.31■□□□□ 0.52
VPS4A-202ENST00000562754 K7ENM7 598 aa18.31■□□□□ 0.52
VPS4A-202ENST00000562754 SLC16A4O15374 487 aa18.31■□□□□ 0.52
VPS4A-202ENST00000562754 PQBP1O60828 265 aaKnown RBP18.31■□□□□ 0.52
VPS4A-202ENST00000562754 MYBP10242 640 aa18.31■□□□□ 0.52
VPS4A-202ENST00000562754 PPP2R5AQ15172 486 aa18.31■□□□□ 0.52
VPS4A-202ENST00000562754 ANKRD33Q7Z3H0 272 aa18.31■□□□□ 0.52
VPS4A-202ENST00000562754 RPAINQ86UA6 219 aa18.31■□□□□ 0.52
VPS4A-202ENST00000562754 FAM178BQ8IXR5 827 aa18.31■□□□□ 0.52
VPS4A-202ENST00000562754 TRIML1Q8N9V2 468 aa18.31■□□□□ 0.52
VPS4A-202ENST00000562754 RNF149Q8NC42 400 aa18.31■□□□□ 0.52
VPS4A-202ENST00000562754 NLRP4Q96MN2 994 aa18.31■□□□□ 0.52
VPS4A-202ENST00000562754 FUCA2Q9BTY2 467 aa18.31■□□□□ 0.52
VPS4A-202ENST00000562754 ADAMTS10Q9H324 1103 aa18.31■□□□□ 0.52
VPS4A-202ENST00000562754 MRPL44Q9H9J2 332 aaKnown RBP18.31■□□□□ 0.52
VPS4A-202ENST00000562754 ARHGAP28Q9P2N2 729 aa18.31■□□□□ 0.52
VPS4A-202ENST00000562754 CCDC169A6NNP5 214 aa18.3■□□□□ 0.52
VPS4A-202ENST00000562754 RBAK-RBAKDNI3L0D1 243 aa18.3■□□□□ 0.52
VPS4A-202ENST00000562754 ASAP2O43150 1006 aa18.3■□□□□ 0.52
VPS4A-202ENST00000562754 GPR32O75388 356 aa18.3■□□□□ 0.52
VPS4A-202ENST00000562754 PPP1R37O75864 691 aa18.3■□□□□ 0.52
VPS4A-202ENST00000562754 LETM1O95202 739 aaPredicted RBP18.3■□□□□ 0.52
VPS4A-202ENST00000562754 SRGAP2CP0DJJ0 459 aa18.3■□□□□ 0.52
VPS4A-202ENST00000562754 MAPTP10636 758 aaKnown RBP18.3■□□□□ 0.52
VPS4A-202ENST00000562754 NLRP11P59045 1033 aaKnown RBP18.3■□□□□ 0.52
VPS4A-202ENST00000562754 MRPS6P82932 125 aaKnown RBP18.3■□□□□ 0.52
VPS4A-202ENST00000562754 TLE2Q04725 743 aa18.3■□□□□ 0.52
VPS4A-202ENST00000562754 PSMD2Q13200 908 aa18.3■□□□□ 0.52
VPS4A-202ENST00000562754 KIZQ2M2Z5 673 aa18.3■□□□□ 0.52
VPS4A-202ENST00000562754 ZNF658Q5TYW1 1059 aaPredicted RBP18.3■□□□□ 0.52
VPS4A-202ENST00000562754 CDCA2Q69YH5 1023 aaPredicted RBP18.3■□□□□ 0.52
VPS4A-202ENST00000562754 EPM2AIP1Q7L775 607 aaPredicted RBP18.3■□□□□ 0.52
VPS4A-202ENST00000562754 TMEM161BQ8NDZ6 487 aa18.3■□□□□ 0.52
VPS4A-202ENST00000562754 NTPCRQ9BSD7 190 aaKnown RBP18.3■□□□□ 0.52
VPS4A-202ENST00000562754 STRA6Q9BX79 667 aa18.3■□□□□ 0.52
VPS4A-202ENST00000562754 CDHR5Q9HBB8 845 aa18.3■□□□□ 0.52
VPS4A-202ENST00000562754 KMT5AQ9NQR1 393 aa18.3■□□□□ 0.52
VPS4A-202ENST00000562754 TANC1Q9C0D5 1861 aa18.3■□□□□ 0.52
VPS4A-202ENST00000562754 A0A087WZ62 844 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 GCNT3O95395 438 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 CTSHP09668 335 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 NLRP12P59046 1061 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 PTENP60484 403 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 TYRO3Q06418 890 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 RBL2Q08999 1139 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 MGAT3Q09327 533 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 TFDP1Q14186 410 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 DPCR1Q3MIW9 517 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 ZC2HC1CQ53FD0 456 aaPredicted RBP18.29■□□□□ 0.52
VPS4A-202ENST00000562754 TAS1R3Q7RTX0 852 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 ZNF720Q7Z2F6 126 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 HAUS6Q7Z4H7 955 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 ZNF410Q86VK4 478 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 NME8Q8N427 588 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 DEPTORQ8TB45 409 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 TOX2Q96NM4 488 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 FDXACB1Q9BRP7 624 aaPredicted RBP18.29■□□□□ 0.52
VPS4A-202ENST00000562754 ST6GALNAC4Q9H4F1 302 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 IFT122Q9HBG6 1241 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 ATP11BQ9Y2G3 1177 aa18.29■□□□□ 0.52
VPS4A-202ENST00000562754 TLR3O15455 904 aaKnown RBP18.28■□□□□ 0.52
VPS4A-202ENST00000562754 CD44P16070 742 aaKnown RBP18.28■□□□□ 0.52
VPS4A-202ENST00000562754 THPOP40225 353 aa18.28■□□□□ 0.52
VPS4A-202ENST00000562754 SMTNP53814 917 aa18.28■□□□□ 0.52
VPS4A-202ENST00000562754 POU5F1BQ06416 359 aa18.28■□□□□ 0.52
VPS4A-202ENST00000562754 FAAP100Q0VG06 881 aa18.28■□□□□ 0.52
VPS4A-202ENST00000562754 TRAF7Q6Q0C0 670 aa18.28■□□□□ 0.52
VPS4A-202ENST00000562754 SASS6Q6UVJ0 657 aa18.28■□□□□ 0.52
VPS4A-202ENST00000562754 RSPH3Q86UC2 560 aa18.28■□□□□ 0.52
VPS4A-202ENST00000562754 IFNLR1Q8IU57 520 aaPredicted RBP18.28■□□□□ 0.52
VPS4A-202ENST00000562754 SCFD1Q8WVM8 642 aa18.28■□□□□ 0.52
VPS4A-202ENST00000562754 NLRP7Q8WX94 980 aa18.28■□□□□ 0.52
VPS4A-202ENST00000562754 KCNN1Q92952 543 aa18.28■□□□□ 0.52
VPS4A-202ENST00000562754 OSMRQ99650 979 aa18.28■□□□□ 0.52
VPS4A-202ENST00000562754 CCDC113Q9H0I3 377 aa18.28■□□□□ 0.52
VPS4A-202ENST00000562754 MINDY3Q9H8M7 445 aa18.28■□□□□ 0.52
VPS4A-202ENST00000562754 TRPV2Q9Y5S1 764 aa18.28■□□□□ 0.52
VPS4A-202ENST00000562754 CDY2AQ9Y6F7 541 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms