RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 DRP2Q13474 957 aa23.34■■□□□ 1.33
CLN3-209ENST00000561689 SYCP1Q15431 976 aa23.34■■□□□ 1.33
CLN3-209ENST00000561689 FKBP15Q5T1M5 1219 aa23.34■■□□□ 1.33
CLN3-209ENST00000561689 TC2NQ8N9U0 490 aa23.34■■□□□ 1.33
CLN3-209ENST00000561689 GOLGA5Q8TBA6 731 aa23.34■■□□□ 1.33
CLN3-209ENST00000561689 TRAPPC12Q8WVT3 735 aa23.34■■□□□ 1.33
CLN3-209ENST00000561689 ARID2Q68CP9 1835 aa23.34■■□□□ 1.33
CLN3-209ENST00000561689 A0A1W2PQC6 194 aa23.34■■□□□ 1.33
CLN3-209ENST00000561689 TBC1D8O95759 1140 aa23.34■■□□□ 1.33
CLN3-209ENST00000561689 GYPCP04921 128 aa23.34■■□□□ 1.33
CLN3-209ENST00000561689 ZNF865P0CJ78 1059 aaPredicted RBP23.34■■□□□ 1.33
CLN3-209ENST00000561689 GLRA2P23416 452 aa23.34■■□□□ 1.33
CLN3-209ENST00000561689 KLK7P49862 253 aa23.34■■□□□ 1.33
CLN3-209ENST00000561689 APLP1P51693 650 aa23.34■■□□□ 1.33
CLN3-209ENST00000561689 FCGRTP55899 365 aa23.34■■□□□ 1.33
CLN3-209ENST00000561689 NFIL3Q16649 462 aa23.34■■□□□ 1.33
CLN3-209ENST00000561689 OLFML2BQ68BL8 750 aa23.34■■□□□ 1.33
CLN3-209ENST00000561689 ARMCX3Q9UH62 379 aaPredicted RBP23.34■■□□□ 1.33
CLN3-209ENST00000561689 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.34■■□□□ 1.33
CLN3-209ENST00000561689 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.34■■□□□ 1.33
CLN3-209ENST00000561689 CASP14P31944 242 aa23.33■■□□□ 1.33
CLN3-209ENST00000561689 LACTBP83111 547 aaPredicted RBP23.33■■□□□ 1.33
CLN3-209ENST00000561689 FRMD5Q7Z6J6 570 aa23.33■■□□□ 1.33
CLN3-209ENST00000561689 LENG1Q96BZ8 264 aaPredicted RBP23.33■■□□□ 1.33
CLN3-209ENST00000561689 SUGCTQ9HAC7 445 aa23.33■■□□□ 1.33
CLN3-209ENST00000561689 DMAC2Q9NW81 257 aa23.33■■□□□ 1.33
CLN3-209ENST00000561689 AKR1B15C9JRZ8 316 aaPredicted RBP23.32■■□□□ 1.32
CLN3-209ENST00000561689 DYNC1LI2O43237 492 aaPredicted RBP23.32■■□□□ 1.32
CLN3-209ENST00000561689 PPFIA4O75335 1185 aa23.32■■□□□ 1.32
CLN3-209ENST00000561689 EPB41P11171 864 aaKnown RBP23.32■■□□□ 1.32
CLN3-209ENST00000561689 YY1P25490 414 aa23.32■■□□□ 1.32
CLN3-209ENST00000561689 FXR1P51114 621 aaKnown RBP eCLIP23.32■■□□□ 1.32
CLN3-209ENST00000561689 CCDC155Q8N6L0 562 aa23.32■■□□□ 1.32
CLN3-209ENST00000561689 KIAA1524Q8TCG1 905 aa23.32■■□□□ 1.32
CLN3-209ENST00000561689 ZBTB10Q96DT7 871 aa23.32■■□□□ 1.32
CLN3-209ENST00000561689 RNF225M0QZC1 329 aaPredicted RBP23.32■■□□□ 1.32
CLN3-209ENST00000561689 SLC16A3O15427 465 aaKnown RBP23.32■■□□□ 1.32
CLN3-209ENST00000561689 HBP1O60381 514 aa23.32■■□□□ 1.32
CLN3-209ENST00000561689 MMP3P08254 477 aa23.32■■□□□ 1.32
CLN3-209ENST00000561689 LRRC71Q8N4P6 559 aa23.32■■□□□ 1.32
CLN3-209ENST00000561689 PCMTD1Q96MG8 357 aaPredicted RBP23.32■■□□□ 1.32
CLN3-209ENST00000561689 C16orf70Q9BSU1 422 aa23.32■■□□□ 1.32
CLN3-209ENST00000561689 PCIF1Q9H4Z3 704 aa23.32■■□□□ 1.32
CLN3-209ENST00000561689 PPME1Q9Y570 386 aa23.32■■□□□ 1.32
CLN3-209ENST00000561689 MAP4K3Q8IVH8 894 aa23.31■■□□□ 1.32
CLN3-209ENST00000561689 CBWD1Q9BRT8 395 aa23.31■■□□□ 1.32
CLN3-209ENST00000561689 ARHGAP28Q9P2N2 729 aa23.31■■□□□ 1.32
CLN3-209ENST00000561689 GABRQQ9UN88 632 aa23.31■■□□□ 1.32
CLN3-209ENST00000561689 GNEQ9Y223 722 aaKnown RBP23.31■■□□□ 1.32
CLN3-209ENST00000561689 LRRIQ4A6NIV6 560 aa23.31■■□□□ 1.32
CLN3-209ENST00000561689 PSMC2P35998 433 aaKnown RBP23.31■■□□□ 1.32
CLN3-209ENST00000561689 IGBP1P78318 339 aa23.31■■□□□ 1.32
CLN3-209ENST00000561689 MKRN4PQ13434 485 aaPredicted RBP23.31■■□□□ 1.32
CLN3-209ENST00000561689 FAM186BQ8IYM0 893 aa23.31■■□□□ 1.32
CLN3-209ENST00000561689 PRPF31Q8WWY3 499 aaKnown RBP23.31■■□□□ 1.32
CLN3-209ENST00000561689 HVCN1Q96D96 273 aa23.31■■□□□ 1.32
CLN3-209ENST00000561689 ERGIC2Q96RQ1 377 aa23.31■■□□□ 1.32
CLN3-209ENST00000561689 EXOC7Q9UPT5 735 aa23.31■■□□□ 1.32
CLN3-209ENST00000561689 ANKRD63C9JTQ0 380 aa23.3■■□□□ 1.32
CLN3-209ENST00000561689 EXOC3O60645 756 aa23.3■■□□□ 1.32
CLN3-209ENST00000561689 IGHA2P01877 340 aa23.3■■□□□ 1.32
CLN3-209ENST00000561689 DCAF17Q5H9S7 520 aaPredicted RBP23.3■■□□□ 1.32
CLN3-209ENST00000561689 TAS1R3Q7RTX0 852 aa23.3■■□□□ 1.32
CLN3-209ENST00000561689 SLC9A9Q8IVB4 645 aa23.3■■□□□ 1.32
CLN3-209ENST00000561689 DEPTORQ8TB45 409 aa23.3■■□□□ 1.32
CLN3-209ENST00000561689 METTL14Q9HCE5 456 aaKnown RBP23.3■■□□□ 1.32
CLN3-209ENST00000561689 FRMD4BQ9Y2L6 1034 aa23.3■■□□□ 1.32
CLN3-209ENST00000561689 H3BRB1 525 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 MFAP3LO75121 409 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 TPM1P09493 284 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 INSRRP14616 1297 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 NAMPTP43490 491 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 CAP1Q01518 475 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 KCNH2Q12809 1159 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 PPP2R5AQ15172 486 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 DGKDQ16760 1214 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 RDH13Q8NBN7 331 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 BORCS6Q96GS4 357 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 TMX1Q9H3N1 280 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 TUT1Q9H6E5 874 aaKnown RBP23.29■■□□□ 1.32
CLN3-209ENST00000561689 KCNG1Q9UIX4 513 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 FAM184BQ9ULE4 1060 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 IGKV6-21A0A0C4DH24 114 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 XRCC5P13010 732 aaKnown RBP23.29■■□□□ 1.32
CLN3-209ENST00000561689 FLT3LGP49771 235 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 IRX5P78411 483 aaPredicted RBP23.29■■□□□ 1.32
CLN3-209ENST00000561689 IRF5Q13568 498 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 CAPSQ13938 189 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 TRIM14Q14142 442 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 TLK2Q86UE8 772 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 ZNF215Q9UL58 517 aaPredicted RBP23.29■■□□□ 1.32
CLN3-209ENST00000561689 SIK3Q9Y2K2 1263 aa23.29■■□□□ 1.32
CLN3-209ENST00000561689 TTC26A0AVF1 554 aa23.28■■□□□ 1.32
CLN3-209ENST00000561689 H0YCG3 227 aa23.28■■□□□ 1.32
CLN3-209ENST00000561689 HOXD8P13378 290 aaPredicted RBP23.28■■□□□ 1.32
CLN3-209ENST00000561689 TRIM21P19474 475 aaKnown RBP23.28■■□□□ 1.32
CLN3-209ENST00000561689 CNGA1P29973 690 aa23.28■■□□□ 1.32
CLN3-209ENST00000561689 TCERG1LQ5VWI1 586 aa23.28■■□□□ 1.32
CLN3-209ENST00000561689 IER5Q5VY09 327 aa23.28■■□□□ 1.32
CLN3-209ENST00000561689 REM2Q8IYK8 340 aaPredicted RBP23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms