RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 ECHDC2Q86YB7 292 aa13.11□□□□□ -0.31
USP3-220ENST00000561381 RNF169Q8NCN4 708 aa13.11□□□□□ -0.31
USP3-220ENST00000561381 ZNF274Q96GC6 653 aaPredicted RBP13.11□□□□□ -0.31
USP3-220ENST00000561381 SCLT1Q96NL6 688 aa13.11□□□□□ -0.31
USP3-220ENST00000561381 CEP89Q96ST8 783 aa13.11□□□□□ -0.31
USP3-220ENST00000561381 TMEM117Q9H0C3 514 aa13.11□□□□□ -0.31
USP3-220ENST00000561381 SEPT9Q9UHD8 586 aaPredicted RBP13.11□□□□□ -0.31
USP3-220ENST00000561381 ARIH1Q9Y4X5 557 aaPredicted RBP13.11□□□□□ -0.31
USP3-220ENST00000561381 CYP3A7-CYP3A51PA0A087WV96 503 aa13.1□□□□□ -0.31
USP3-220ENST00000561381 SLC37A4O43826 429 aa13.1□□□□□ -0.31
USP3-220ENST00000561381 DEXIO95424 95 aa13.1□□□□□ -0.31
USP3-220ENST00000561381 ZSCAN20P17040 1043 aaPredicted RBP13.1□□□□□ -0.31
USP3-220ENST00000561381 LAG3P18627 525 aa13.1□□□□□ -0.31
USP3-220ENST00000561381 CYP3A7P24462 503 aa13.1□□□□□ -0.31
USP3-220ENST00000561381 COASYQ13057 564 aa13.1□□□□□ -0.31
USP3-220ENST00000561381 DUSP6Q16828 381 aa13.1□□□□□ -0.31
USP3-220ENST00000561381 INF2Q27J81 1249 aa13.1□□□□□ -0.31
USP3-220ENST00000561381 CLLU1OSQ5K130 101 aa13.1□□□□□ -0.31
USP3-220ENST00000561381 PLPP4Q5VZY2 271 aa13.1□□□□□ -0.31
USP3-220ENST00000561381 RNF135Q8IUD6 432 aa13.1□□□□□ -0.31
USP3-220ENST00000561381 DAGLBQ8NCG7 672 aa13.1□□□□□ -0.31
USP3-220ENST00000561381 ETNPPLQ8TBG4 499 aa13.1□□□□□ -0.31
USP3-220ENST00000561381 NLRP7Q8WX94 980 aa13.1□□□□□ -0.31
USP3-220ENST00000561381 MBOAT7Q96N66 472 aa13.1□□□□□ -0.31
USP3-220ENST00000561381 POP1Q99575 1024 aaKnown RBP13.1□□□□□ -0.31
USP3-220ENST00000561381 NIFKQ9BYG3 293 aaKnown RBP13.1□□□□□ -0.31
USP3-220ENST00000561381 KCNJ14Q9UNX9 436 aa13.1□□□□□ -0.31
USP3-220ENST00000561381 USP15Q9Y4E8 981 aaPredicted RBP13.1□□□□□ -0.31
USP3-220ENST00000561381 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.09□□□□□ -0.31
USP3-220ENST00000561381 ATF7P17544 494 aaPredicted RBP13.09□□□□□ -0.31
USP3-220ENST00000561381 CSPP1Q1MSJ5 1256 aa13.09□□□□□ -0.31
USP3-220ENST00000561381 XKR3Q5GH77 459 aa13.09□□□□□ -0.31
USP3-220ENST00000561381 KCNT2Q6UVM3 1135 aa13.09□□□□□ -0.31
USP3-220ENST00000561381 ZNF598Q86UK7 904 aaKnown RBP13.09□□□□□ -0.31
USP3-220ENST00000561381 ABI1Q8IZP0 508 aa13.09□□□□□ -0.31
USP3-220ENST00000561381 RDM1Q8NG50 284 aa13.09□□□□□ -0.31
USP3-220ENST00000561381 MRPS27Q92552 414 aaKnown RBP13.09□□□□□ -0.31
USP3-220ENST00000561381 C22orf23Q9BZE7 217 aa13.09□□□□□ -0.31
USP3-220ENST00000561381 TM6SF1Q9BZW5 370 aa13.09□□□□□ -0.31
USP3-220ENST00000561381 GJB4Q9NTQ9 266 aa13.09□□□□□ -0.31
USP3-220ENST00000561381 PDRG1Q9NUG6 133 aa13.09□□□□□ -0.31
USP3-220ENST00000561381 DDX25Q9UHL0 483 aaKnown RBP13.09□□□□□ -0.31
USP3-220ENST00000561381 BOLA1Q9Y3E2 137 aa13.09□□□□□ -0.31
USP3-220ENST00000561381 A0A087WZ62 844 aa13.08□□□□□ -0.32
USP3-220ENST00000561381 IGKV6-21A0A0C4DH24 114 aa13.08□□□□□ -0.32
USP3-220ENST00000561381 A0A0U1RQF3 1178 aa13.08□□□□□ -0.32
USP3-220ENST00000561381 DDX11L8A8MPP1 907 aa13.08□□□□□ -0.32
USP3-220ENST00000561381 HIDE1A8MVS5 230 aa13.08□□□□□ -0.32
USP3-220ENST00000561381 EML1O00423 815 aa13.08□□□□□ -0.32
USP3-220ENST00000561381 HOXA2O43364 376 aa13.08□□□□□ -0.32
USP3-220ENST00000561381 EPB41L2O43491 1005 aaKnown RBP13.08□□□□□ -0.32
USP3-220ENST00000561381 PLCB3Q01970 1234 aa13.08□□□□□ -0.32
USP3-220ENST00000561381 SCRN1Q12765 414 aa13.08□□□□□ -0.32
USP3-220ENST00000561381 NONOQ15233 471 aaKnown RBP eCLIP13.08□□□□□ -0.32
USP3-220ENST00000561381 LETM2Q2VYF4 491 aa13.08□□□□□ -0.32
USP3-220ENST00000561381 HERC4Q5GLZ8 1057 aaPredicted RBP13.08□□□□□ -0.32
USP3-220ENST00000561381 PLA2G4FQ68DD2 849 aa13.08□□□□□ -0.32
USP3-220ENST00000561381 HFE2Q6ZVN8 426 aa13.08□□□□□ -0.32
USP3-220ENST00000561381 LRRC43Q8N309 656 aa13.08□□□□□ -0.32
USP3-220ENST00000561381 HELQQ8TDG4 1101 aa13.08□□□□□ -0.32
USP3-220ENST00000561381 ZNF558Q96NG5 402 aa13.08□□□□□ -0.32
USP3-220ENST00000561381 TCF25Q9BQ70 676 aa13.08□□□□□ -0.32
USP3-220ENST00000561381 FDXACB1Q9BRP7 624 aaPredicted RBP13.08□□□□□ -0.32
USP3-220ENST00000561381 TECTAO75443 2155 aa13.08□□□□□ -0.32
USP3-220ENST00000561381 MUC6Q6W4X9 2439 aa13.08□□□□□ -0.32
USP3-220ENST00000561381 LOC730098B7Z3J9 87 aa13.07□□□□□ -0.32
USP3-220ENST00000561381 KCNC3Q14003 757 aa13.07□□□□□ -0.32
USP3-220ENST00000561381 LONRF3Q496Y0 759 aa13.07□□□□□ -0.32
USP3-220ENST00000561381 GALNT17Q6IS24 598 aa13.07□□□□□ -0.32
USP3-220ENST00000561381 PDE12Q6L8Q7 609 aaKnown RBP13.07□□□□□ -0.32
USP3-220ENST00000561381 LLGL2Q6P1M3 1020 aa13.07□□□□□ -0.32
USP3-220ENST00000561381 CPLX2Q6PUV4 134 aaKnown RBP13.07□□□□□ -0.32
USP3-220ENST00000561381 MOXD1Q6UVY6 613 aa13.07□□□□□ -0.32
USP3-220ENST00000561381 ANO5Q75V66 913 aa13.07□□□□□ -0.32
USP3-220ENST00000561381 KRT25Q7Z3Z0 450 aa13.07□□□□□ -0.32
USP3-220ENST00000561381 KSR1Q8IVT5 923 aa13.07□□□□□ -0.32
USP3-220ENST00000561381 SPNS2Q8IVW8 549 aa13.07□□□□□ -0.32
USP3-220ENST00000561381 ZNF710Q8N1W2 664 aa13.07□□□□□ -0.32
USP3-220ENST00000561381 OXER1Q8TDS5 423 aa13.07□□□□□ -0.32
USP3-220ENST00000561381 LPPQ93052 612 aa13.07□□□□□ -0.32
USP3-220ENST00000561381 CDCA3Q99618 268 aaPredicted RBP13.07□□□□□ -0.32
USP3-220ENST00000561381 PHF20Q9BVI0 1012 aa13.07□□□□□ -0.32
USP3-220ENST00000561381 APOL5Q9BWW9 433 aa13.07□□□□□ -0.32
USP3-220ENST00000561381 GCOM2Q9BZD3 368 aaPredicted RBP13.07□□□□□ -0.32
USP3-220ENST00000561381 ENTPD7Q9NQZ7 604 aa13.07□□□□□ -0.32
USP3-220ENST00000561381 SUCLA2Q9P2R7 463 aaPredicted RBP13.07□□□□□ -0.32
USP3-220ENST00000561381 WRAP73Q9P2S5 460 aaPredicted RBP13.07□□□□□ -0.32
USP3-220ENST00000561381 PUF60Q9UHX1 559 aaKnown RBP13.07□□□□□ -0.32
USP3-220ENST00000561381 VAV3Q9UKW4 847 aa13.07□□□□□ -0.32
USP3-220ENST00000561381 TPCN1Q9ULQ1 816 aa13.07□□□□□ -0.32
USP3-220ENST00000561381 LZTS1Q9Y250 596 aa13.07□□□□□ -0.32
USP3-220ENST00000561381 MEIS3P2A8K0S8 358 aa13.06□□□□□ -0.32
USP3-220ENST00000561381 NT5C1B-RDH14C9J2C7 533 aa13.06□□□□□ -0.32
USP3-220ENST00000561381 EOMESO95936 686 aa13.06□□□□□ -0.32
USP3-220ENST00000561381 TECP42680 631 aa13.06□□□□□ -0.32
USP3-220ENST00000561381 NPEPPSP55786 919 aa13.06□□□□□ -0.32
USP3-220ENST00000561381 PSMC5P62195 406 aa13.06□□□□□ -0.32
USP3-220ENST00000561381 EARS2Q5JPH6 523 aaKnown RBP13.06□□□□□ -0.32
USP3-220ENST00000561381 SYCE2Q6PIF2 218 aa13.06□□□□□ -0.32
USP3-220ENST00000561381 RHPN2Q8IUC4 686 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms