RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 CABP7Q86V35 215 aa13.13□□□□□ -0.31
LDLR-212ENST00000560467 RNF135Q8IUD6 432 aa13.13□□□□□ -0.31
LDLR-212ENST00000560467 CNNM3Q8NE01 707 aa13.13□□□□□ -0.31
LDLR-212ENST00000560467 GPT2Q8TD30 523 aa13.13□□□□□ -0.31
LDLR-212ENST00000560467 GLG1Q92896 1179 aa13.13□□□□□ -0.31
LDLR-212ENST00000560467 LRRC27Q9C0I9 530 aa13.13□□□□□ -0.31
LDLR-212ENST00000560467 NUP62CLQ9H1M0 184 aa13.13□□□□□ -0.31
LDLR-212ENST00000560467 KCNMB3Q9NPA1 279 aa13.13□□□□□ -0.31
LDLR-212ENST00000560467 KCNH7Q9NS40 1196 aa13.13□□□□□ -0.31
LDLR-212ENST00000560467 DACT1Q9NYF0 836 aa13.13□□□□□ -0.31
LDLR-212ENST00000560467 CD207Q9UJ71 328 aa13.13□□□□□ -0.31
LDLR-212ENST00000560467 PLAGL2Q9UPG8 496 aa13.13□□□□□ -0.31
LDLR-212ENST00000560467 KDM3AQ9Y4C1 1321 aa13.13□□□□□ -0.31
LDLR-212ENST00000560467 MSH4O15457 936 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 ZNF202O95125 648 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 ITGB1P05556 798 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 STAT6P42226 847 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 NDUFV1P49821 464 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 GATMP50440 423 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 NDUFA8P51970 172 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 AMPD3Q01432 767 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 TMEM62Q0P6H9 643 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 PAN2Q504Q3 1202 aaKnown RBP13.12□□□□□ -0.31
LDLR-212ENST00000560467 HERC4Q5GLZ8 1057 aaPredicted RBP13.12□□□□□ -0.31
LDLR-212ENST00000560467 NCAPH2Q6IBW4 605 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 SHC4Q6S5L8 630 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 ADGRD2Q7Z7M1 963 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 RTN4RL1Q86UN2 441 aaPredicted RBP13.12□□□□□ -0.31
LDLR-212ENST00000560467 KCTD17Q8N5Z5 321 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 SEPT1Q8WYJ6 367 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 TIGD1Q96MW7 591 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 PCYT2Q99447 389 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 POP1Q99575 1024 aaKnown RBP13.12□□□□□ -0.31
LDLR-212ENST00000560467 PLVAPQ9BX97 442 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 CCSER1Q9C0I3 900 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 NT5C3AQ9H0P0 336 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 CUEDC2Q9H467 287 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 ERAP1Q9NZ08 941 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 SAMM50Q9Y512 469 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 PCDHGC5Q9Y5F6 944 aa13.12□□□□□ -0.31
LDLR-212ENST00000560467 IGLV3-22A0A075B6J6 115 aa13.11□□□□□ -0.31
LDLR-212ENST00000560467 WNT7AO00755 349 aa13.11□□□□□ -0.31
LDLR-212ENST00000560467 POLR2DO15514 142 aaKnown RBP13.11□□□□□ -0.31
LDLR-212ENST00000560467 DKC1O60832 514 aaKnown RBP eCLIP13.11□□□□□ -0.31
LDLR-212ENST00000560467 IBSPP21815 317 aaPredicted RBP13.11□□□□□ -0.31
LDLR-212ENST00000560467 KRT76Q01546 638 aa13.11□□□□□ -0.31
LDLR-212ENST00000560467 ADAM15Q13444 863 aa13.11□□□□□ -0.31
LDLR-212ENST00000560467 SPECC1Q5M775 1068 aa13.11□□□□□ -0.31
LDLR-212ENST00000560467 CMTR2Q8IYT2 770 aaKnown RBP13.11□□□□□ -0.31
LDLR-212ENST00000560467 PDILTQ8N807 584 aa13.11□□□□□ -0.31
LDLR-212ENST00000560467 IGSF22Q8N9C0 903 aa13.11□□□□□ -0.31
LDLR-212ENST00000560467 CYP2W1Q8TAV3 490 aa13.11□□□□□ -0.31
LDLR-212ENST00000560467 ETNPPLQ8TBG4 499 aa13.11□□□□□ -0.31
LDLR-212ENST00000560467 SNX29Q8TEQ0 813 aa13.11□□□□□ -0.31
LDLR-212ENST00000560467 TRAPPC12Q8WVT3 735 aa13.11□□□□□ -0.31
LDLR-212ENST00000560467 HAS1Q92839 578 aa13.11□□□□□ -0.31
LDLR-212ENST00000560467 SLC5A5Q92911 643 aa13.11□□□□□ -0.31
LDLR-212ENST00000560467 PANK2Q9BZ23 570 aa13.11□□□□□ -0.31
LDLR-212ENST00000560467 SMARCAD1Q9H4L7 1026 aa13.11□□□□□ -0.31
LDLR-212ENST00000560467 MAGEF1Q9HAY2 307 aa13.11□□□□□ -0.31
LDLR-212ENST00000560467 AGO4Q9HCK5 861 aaKnown RBP13.11□□□□□ -0.31
LDLR-212ENST00000560467 BMP2KQ9NSY1 1161 aaPredicted RBP13.11□□□□□ -0.31
LDLR-212ENST00000560467 CLEC1BQ9P126 229 aa13.11□□□□□ -0.31
LDLR-212ENST00000560467 ZNF318Q5VUA4 2279 aa13.11□□□□□ -0.31
LDLR-212ENST00000560467 FAM237AA0A1B0GTK4 181 aa13.1□□□□□ -0.31
LDLR-212ENST00000560467 NR1I2O75469 434 aa13.1□□□□□ -0.31
LDLR-212ENST00000560467 SMC2O95347 1197 aa13.1□□□□□ -0.31
LDLR-212ENST00000560467 ARP10275 920 aa13.1□□□□□ -0.31
LDLR-212ENST00000560467 INSRRP14616 1297 aa13.1□□□□□ -0.31
LDLR-212ENST00000560467 LIG1P18858 919 aa13.1□□□□□ -0.31
LDLR-212ENST00000560467 SFNP31947 248 aa13.1□□□□□ -0.31
LDLR-212ENST00000560467 CCT6AP40227 531 aaKnown RBP13.1□□□□□ -0.31
LDLR-212ENST00000560467 JAK3P52333 1124 aa13.1□□□□□ -0.31
LDLR-212ENST00000560467 NPAS4Q8IUM7 802 aa13.1□□□□□ -0.31
LDLR-212ENST00000560467 FMR1NBQ8N0W7 255 aaPredicted RBP13.1□□□□□ -0.31
LDLR-212ENST00000560467 CRIPAKQ8N1N5 446 aa13.1□□□□□ -0.31
LDLR-212ENST00000560467 KLHL23Q8NBE8 558 aa13.1□□□□□ -0.31
LDLR-212ENST00000560467 SPPL3Q8TCT6 385 aa13.1□□□□□ -0.31
LDLR-212ENST00000560467 CCDC47Q96A33 483 aaKnown RBP13.1□□□□□ -0.31
LDLR-212ENST00000560467 DHX58Q96C10 678 aa13.1□□□□□ -0.31
LDLR-212ENST00000560467 EPSTI1Q96J88 318 aa13.1□□□□□ -0.31
LDLR-212ENST00000560467 MSLNLQ96KJ4 702 aa13.1□□□□□ -0.31
LDLR-212ENST00000560467 GZF1Q9H116 711 aaPredicted RBP13.1□□□□□ -0.31
LDLR-212ENST00000560467 JPH1Q9HDC5 661 aaPredicted RBP13.1□□□□□ -0.31
LDLR-212ENST00000560467 TRPC6Q9Y210 931 aa13.1□□□□□ -0.31
LDLR-212ENST00000560467 TRPV2Q9Y5S1 764 aa13.1□□□□□ -0.31
LDLR-212ENST00000560467 TECTAO75443 2155 aa13.1□□□□□ -0.31
LDLR-212ENST00000560467 WDFY4Q6ZS81 3184 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 WDR64B1ANS9 1081 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 CHMP2AO43633 222 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 EYA4O95677 639 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 GLP2RO95838 553 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 SLFN14P0C7P3 912 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 NRIP1P48552 1158 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 PAK2Q13177 524 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 PPP2R5CQ13362 524 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 IL17AQ16552 155 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 SASS6Q6UVJ0 657 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 MIER3Q7Z3K6 550 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 RBM23Q86U06 439 aaKnown RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms