RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 TMEM265A0A087WTH1 108 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 GLRA2P23416 452 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 NAMPTP43490 491 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 ME1P48163 572 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 SLC12A3P55017 1021 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 PTENP60484 403 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 CAPSQ13938 189 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 FAM102BQ5T8I3 360 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 RRAGBQ5VZM2 374 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 RINT1Q6NUQ1 792 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 C1orf186Q6ZWK4 172 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 KSR1Q8IVT5 923 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 HERC6Q8IVU3 1022 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 RNF149Q8NC42 400 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 ASAP3Q8TDY4 903 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 LARP4BQ92615 738 aaKnown RBP14.41□□□□□ -0.1
NEDD8-208ENST00000560427 RAD54LQ92698 747 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 PYM1Q9BRP8 204 aaKnown RBP14.41□□□□□ -0.1
NEDD8-208ENST00000560427 C2orf40Q9H1Z8 148 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 CHST12Q9NRB3 414 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 BLOC1S4Q9NUP1 217 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 KCNG1Q9UIX4 513 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 PHLPP2Q6ZVD8 1323 aa14.41□□□□□ -0.1
NEDD8-208ENST00000560427 COL4A6Q14031 1691 aa14.4□□□□□ -0.1
NEDD8-208ENST00000560427 GJB5O95377 273 aa14.4□□□□□ -0.1
NEDD8-208ENST00000560427 SRGAP2CP0DJJ0 459 aa14.4□□□□□ -0.1
NEDD8-208ENST00000560427 NCLP19338 710 aaKnown RBP14.4□□□□□ -0.1
NEDD8-208ENST00000560427 DEFB103AP81534 67 aa14.4□□□□□ -0.1
NEDD8-208ENST00000560427 SPECC1Q5M775 1068 aa14.4□□□□□ -0.1
NEDD8-208ENST00000560427 AXDND1Q5T1B0 1012 aaPredicted RBP14.4□□□□□ -0.1
NEDD8-208ENST00000560427 CDCA2Q69YH5 1023 aaPredicted RBP14.4□□□□□ -0.1
NEDD8-208ENST00000560427 USP49Q70CQ1 688 aa14.4□□□□□ -0.1
NEDD8-208ENST00000560427 LEO1Q8WVC0 666 aaPredicted RBP14.4□□□□□ -0.1
NEDD8-208ENST00000560427 IFT74Q96LB3 600 aa14.4□□□□□ -0.1
NEDD8-208ENST00000560427 SPATA32Q96LK8 384 aa14.4□□□□□ -0.1
NEDD8-208ENST00000560427 RUSC1Q9BVN2 902 aa14.4□□□□□ -0.1
NEDD8-208ENST00000560427 TMX1Q9H3N1 280 aa14.4□□□□□ -0.1
NEDD8-208ENST00000560427 CUEDC2Q9H467 287 aa14.4□□□□□ -0.1
NEDD8-208ENST00000560427 GPRC5CQ9NQ84 441 aa14.4□□□□□ -0.1
NEDD8-208ENST00000560427 RGS18Q9NS28 235 aa14.4□□□□□ -0.1
NEDD8-208ENST00000560427 DACT1Q9NYF0 836 aa14.4□□□□□ -0.1
NEDD8-208ENST00000560427 FAM13BQ9NYF5 915 aa14.4□□□□□ -0.1
NEDD8-208ENST00000560427 ODF2LQ9ULJ1 636 aa14.4□□□□□ -0.1
NEDD8-208ENST00000560427 PCDHA7Q9UN72 937 aa14.4□□□□□ -0.1
NEDD8-208ENST00000560427 PCDHA11Q9Y5I1 949 aa14.4□□□□□ -0.1
NEDD8-208ENST00000560427 MICAL3Q7RTP6 2002 aa14.4□□□□□ -0.1
NEDD8-208ENST00000560427 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.39□□□□□ -0.11
NEDD8-208ENST00000560427 DENND3A2RUS2 1198 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 ENPP3O14638 875 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 SSBP05455 408 aaKnown RBP eCLIP14.39□□□□□ -0.11
NEDD8-208ENST00000560427 ZSCAN20P17040 1043 aaPredicted RBP14.39□□□□□ -0.11
NEDD8-208ENST00000560427 SCP2P22307 547 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 AXLP30530 894 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 STAT6P42226 847 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 FXR1P51114 621 aaKnown RBP eCLIP14.39□□□□□ -0.11
NEDD8-208ENST00000560427 DMP1Q13316 513 aaPredicted RBP14.39□□□□□ -0.11
NEDD8-208ENST00000560427 DSC3Q14574 896 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.39□□□□□ -0.117e-16■■■□□ 19.1
NEDD8-208ENST00000560427 SLC24A5Q71RS6 500 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 MAEAQ7L5Y9 396 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 CATSPER4Q7RTX7 472 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 NPAS4Q8IUM7 802 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 ZBTB8OSQ8IWT0 167 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 MYOCDQ8IZQ8 938 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 LINC01599Q8WXQ3 324 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 TOP1MTQ969P6 601 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 CCDC51Q96ER9 411 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 PRIMPOLQ96LW4 560 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 PLIN2Q99541 437 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 TRAIPQ9BWF2 469 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 AGPAT5Q9NUQ2 364 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 MSRAQ9UJ68 235 aa14.39□□□□□ -0.11
NEDD8-208ENST00000560427 LRRIQ4A6NIV6 560 aa14.38□□□□□ -0.11
NEDD8-208ENST00000560427 SOX1O00570 391 aaPredicted RBP14.38□□□□□ -0.11
NEDD8-208ENST00000560427 ERLIN2O94905 339 aa14.38□□□□□ -0.11
NEDD8-208ENST00000560427 STAG3L1P0CL83 205 aa14.38□□□□□ -0.11
NEDD8-208ENST00000560427 DNAJB2P25686 324 aa14.38□□□□□ -0.11
NEDD8-208ENST00000560427 SARSP49591 514 aaKnown RBP14.38□□□□□ -0.11
NEDD8-208ENST00000560427 EFNA5P52803 228 aa14.38□□□□□ -0.11
NEDD8-208ENST00000560427 MBTD1Q05BQ5 628 aa14.38□□□□□ -0.11
NEDD8-208ENST00000560427 NCBP1Q09161 790 aaKnown RBP14.38□□□□□ -0.11
NEDD8-208ENST00000560427 RESP18Q5W5W9 173 aa14.38□□□□□ -0.11
NEDD8-208ENST00000560427 ADALQ6DHV7 355 aa14.38□□□□□ -0.11
NEDD8-208ENST00000560427 FAM109BQ6ICB4 259 aaPredicted RBP14.38□□□□□ -0.11
NEDD8-208ENST00000560427 SHC4Q6S5L8 630 aa14.38□□□□□ -0.11
NEDD8-208ENST00000560427 GPBP1Q86WP2 473 aa14.38□□□□□ -0.11
NEDD8-208ENST00000560427 DEPTORQ8TB45 409 aa14.38□□□□□ -0.11
NEDD8-208ENST00000560427 RSPH1Q8WYR4 309 aa14.38□□□□□ -0.11
NEDD8-208ENST00000560427 ZNF668Q96K58 619 aaPredicted RBP14.38□□□□□ -0.11
NEDD8-208ENST00000560427 ADAM2Q99965 735 aa14.38□□□□□ -0.11
NEDD8-208ENST00000560427 PBX4Q9BYU1 374 aa14.38□□□□□ -0.11
NEDD8-208ENST00000560427 MAGEF1Q9HAY2 307 aa14.38□□□□□ -0.11
NEDD8-208ENST00000560427 LAMA3Q16787 3333 aa14.38□□□□□ -0.11
NEDD8-208ENST00000560427 C9IYK1 514 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 INO80B-WBP1J3KQ70 363 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 TLL1O43897 1013 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 HIP1RO75146 1068 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 SKIP12755 728 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 RAB27AP51159 221 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 MAPK7Q13164 816 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms