RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 EMC2Q15006 297 aa13.98□□□□□ -0.17
SMAD3-208ENST00000558827 TTC38Q5R3I4 469 aa13.98□□□□□ -0.17
SMAD3-208ENST00000558827 MCTP1Q6DN14 999 aa13.98□□□□□ -0.17
SMAD3-208ENST00000558827 LRRC55Q6ZSA7 311 aa13.98□□□□□ -0.17
SMAD3-208ENST00000558827 OTUD6AQ7L8S5 288 aa13.98□□□□□ -0.17
SMAD3-208ENST00000558827 HELQQ8TDG4 1101 aa13.98□□□□□ -0.17
SMAD3-208ENST00000558827 POF1BQ8WVV4 589 aa13.98□□□□□ -0.17
SMAD3-208ENST00000558827 SLC7A3Q8WY07 619 aa13.98□□□□□ -0.17
SMAD3-208ENST00000558827 TMX3Q96JJ7 454 aa13.98□□□□□ -0.17
SMAD3-208ENST00000558827 HSD17B14Q9BPX1 270 aa13.98□□□□□ -0.17
SMAD3-208ENST00000558827 NSUN3Q9H649 340 aaKnown RBP13.98□□□□□ -0.17
SMAD3-208ENST00000558827 DHX33Q9H6R0 707 aaKnown RBP13.98□□□□□ -0.17
SMAD3-208ENST00000558827 MINDY3Q9H8M7 445 aa13.98□□□□□ -0.17
SMAD3-208ENST00000558827 UPF2Q9HAU5 1272 aaKnown RBP13.98□□□□□ -0.17
SMAD3-208ENST00000558827 POLD4Q9HCU8 107 aa13.98□□□□□ -0.17
SMAD3-208ENST00000558827 TMEM161AQ9NX61 479 aa13.98□□□□□ -0.17
SMAD3-208ENST00000558827 CLDND1Q9NY35 253 aa13.98□□□□□ -0.17
SMAD3-208ENST00000558827 COG5Q9UP83 839 aa13.98□□□□□ -0.17
SMAD3-208ENST00000558827 PIN4Q9Y237 131 aaKnown RBP13.98□□□□□ -0.17
SMAD3-208ENST00000558827 COL4A3BPQ9Y5P4 624 aa13.98□□□□□ -0.17
SMAD3-208ENST00000558827 MEIS3P2A8K0S8 358 aa13.97□□□□□ -0.17
SMAD3-208ENST00000558827 C5orf67F2Z3F1 127 aa13.97□□□□□ -0.17
SMAD3-208ENST00000558827 LINC01565O15544 149 aa13.97□□□□□ -0.17
SMAD3-208ENST00000558827 ST18O60284 1047 aa13.97□□□□□ -0.17
SMAD3-208ENST00000558827 MED24O75448 989 aa13.97□□□□□ -0.17
SMAD3-208ENST00000558827 AAK1Q2M2I8 961 aa13.97□□□□□ -0.17
SMAD3-208ENST00000558827 TIGD5Q53EQ6 642 aa13.97□□□□□ -0.17
SMAD3-208ENST00000558827 CLLU1OSQ5K130 101 aa13.97□□□□□ -0.17
SMAD3-208ENST00000558827 TWF2Q6IBS0 349 aaKnown RBP13.97□□□□□ -0.17
SMAD3-208ENST00000558827 ADGRD2Q7Z7M1 963 aa13.97□□□□□ -0.17
SMAD3-208ENST00000558827 RBM23Q86U06 439 aaKnown RBP13.97□□□□□ -0.17
SMAD3-208ENST00000558827 MICAL1Q8TDZ2 1067 aa13.97□□□□□ -0.17
SMAD3-208ENST00000558827 PSPC1Q8WXF1 523 aaKnown RBP13.97□□□□□ -0.17
SMAD3-208ENST00000558827 CCDC43Q96MW1 224 aaKnown RBP13.97□□□□□ -0.17
SMAD3-208ENST00000558827 CASD1Q96PB1 797 aa13.97□□□□□ -0.17
SMAD3-208ENST00000558827 FOXP1Q9H334 677 aaPredicted RBP13.97□□□□□ -0.17
SMAD3-208ENST00000558827 CWH43Q9H720 699 aa13.97□□□□□ -0.17
SMAD3-208ENST00000558827 XPNPEP1Q9NQW7 623 aa13.97□□□□□ -0.17
SMAD3-208ENST00000558827 INPP5FQ9Y2H2 1132 aa13.97□□□□□ -0.17
SMAD3-208ENST00000558827 RWDD3Q9Y3V2 267 aa13.97□□□□□ -0.17
SMAD3-208ENST00000558827 ATG2AQ2TAZ0 1938 aa13.97□□□□□ -0.17
SMAD3-208ENST00000558827 NT5C1B-RDH14C9J2C7 533 aa13.96□□□□□ -0.17
SMAD3-208ENST00000558827 USO1O60763 962 aaKnown RBP13.96□□□□□ -0.17
SMAD3-208ENST00000558827 OR52Z1P0C646 297 aa13.96□□□□□ -0.17
SMAD3-208ENST00000558827 ATF7P17544 494 aaPredicted RBP13.96□□□□□ -0.17
SMAD3-208ENST00000558827 RFC5P40937 340 aa13.96□□□□□ -0.17
SMAD3-208ENST00000558827 HYAL1Q12794 435 aa13.96□□□□□ -0.17
SMAD3-208ENST00000558827 ZNF410Q86VK4 478 aa13.96□□□□□ -0.17
SMAD3-208ENST00000558827 NOSTRINQ8IVI9 506 aa13.96□□□□□ -0.17
SMAD3-208ENST00000558827 THNSL1Q8IYQ7 743 aa13.96□□□□□ -0.17
SMAD3-208ENST00000558827 ABI1Q8IZP0 508 aa13.96□□□□□ -0.17
SMAD3-208ENST00000558827 COLGALT1Q8NBJ5 622 aa13.96□□□□□ -0.17
SMAD3-208ENST00000558827 RNF149Q8NC42 400 aa13.96□□□□□ -0.17
SMAD3-208ENST00000558827 ASAP3Q8TDY4 903 aa13.96□□□□□ -0.17
SMAD3-208ENST00000558827 MTRQ99707 1265 aa13.96□□□□□ -0.17
SMAD3-208ENST00000558827 JPH2Q9BR39 696 aaPredicted RBP13.96□□□□□ -0.17
SMAD3-208ENST00000558827 TMEM117Q9H0C3 514 aa13.96□□□□□ -0.17
SMAD3-208ENST00000558827 IFT122Q9HBG6 1241 aa13.96□□□□□ -0.17
SMAD3-208ENST00000558827 GPRC5CQ9NQ84 441 aa13.96□□□□□ -0.17
SMAD3-208ENST00000558827 PCDHB6Q9Y5E3 794 aa13.96□□□□□ -0.17
SMAD3-208ENST00000558827 PCDHB12Q9Y5F1 795 aa13.96□□□□□ -0.17
SMAD3-208ENST00000558827 BDP1A6H8Y1 2624 aa13.95□□□□□ -0.18
SMAD3-208ENST00000558827 PLXNA4Q9HCM2 1894 aa13.95□□□□□ -0.18
SMAD3-208ENST00000558827 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.95□□□□□ -0.18
SMAD3-208ENST00000558827 TNFRSF10AO00220 468 aa13.95□□□□□ -0.18
SMAD3-208ENST00000558827 PER2O15055 1255 aa13.95□□□□□ -0.18
SMAD3-208ENST00000558827 SPATA31C1P0DKV0 1188 aa13.95□□□□□ -0.18
SMAD3-208ENST00000558827 IL9P15248 144 aa13.95□□□□□ -0.18
SMAD3-208ENST00000558827 SFPQP23246 707 aaKnown RBP eCLIP13.95□□□□□ -0.18
SMAD3-208ENST00000558827 GJB2P29033 226 aa13.95□□□□□ -0.18
SMAD3-208ENST00000558827 TOB1P50616 345 aaPredicted RBP13.95□□□□□ -0.18
SMAD3-208ENST00000558827 DLX2Q07687 328 aaPredicted RBP13.95□□□□□ -0.18
SMAD3-208ENST00000558827 POTEGQ6S5H5 508 aa13.95□□□□□ -0.18
SMAD3-208ENST00000558827 ZNF598Q86UK7 904 aaKnown RBP13.95□□□□□ -0.18
SMAD3-208ENST00000558827 FERMT3Q86UX7 667 aa13.95□□□□□ -0.18
SMAD3-208ENST00000558827 CATSPER3Q86XQ3 398 aa13.95□□□□□ -0.18
SMAD3-208ENST00000558827 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.95□□□□□ -0.18
SMAD3-208ENST00000558827 CPB2Q96IY4 423 aa13.95□□□□□ -0.18
SMAD3-208ENST00000558827 PLVAPQ9BX97 442 aa13.95□□□□□ -0.18
SMAD3-208ENST00000558827 ELAC1Q9H777 363 aaKnown RBP13.95□□□□□ -0.18
SMAD3-208ENST00000558827 XIRP2A4UGR9 3374 aa13.95□□□□□ -0.18
SMAD3-208ENST00000558827 A0A0U1RQF3 1178 aa13.94□□□□□ -0.18
SMAD3-208ENST00000558827 FGF18O76093 207 aa13.94□□□□□ -0.18
SMAD3-208ENST00000558827 PHKA2P46019 1235 aa13.94□□□□□ -0.18
SMAD3-208ENST00000558827 RARRES1P49788 294 aa13.94□□□□□ -0.18
SMAD3-208ENST00000558827 ERVFC1P60507 584 aa13.94□□□□□ -0.18
SMAD3-208ENST00000558827 RBM10P98175 930 aaKnown RBP13.94□□□□□ -0.18
SMAD3-208ENST00000558827 CDC42EP1Q00587 391 aa13.94□□□□□ -0.18
SMAD3-208ENST00000558827 CDR2LQ86X02 465 aaPredicted RBP13.94□□□□□ -0.18
SMAD3-208ENST00000558827 ZNF710Q8N1W2 664 aa13.94□□□□□ -0.18
SMAD3-208ENST00000558827 C4orf32Q8N8J7 132 aa13.94□□□□□ -0.18
SMAD3-208ENST00000558827 TCP11Q8WWU5 503 aa13.94□□□□□ -0.18
SMAD3-208ENST00000558827 P2RX5Q93086 422 aa13.94□□□□□ -0.18
SMAD3-208ENST00000558827 INO80BQ9C086 356 aaPredicted RBP13.94□□□□□ -0.18
SMAD3-208ENST00000558827 GBP3Q9H0R5 595 aa13.94□□□□□ -0.18
SMAD3-208ENST00000558827 LMAN2LQ9H0V9 348 aa13.94□□□□□ -0.18
SMAD3-208ENST00000558827 POLR3FQ9H1D9 316 aaPredicted RBP13.94□□□□□ -0.18
SMAD3-208ENST00000558827 AAASQ9NRG9 546 aa13.94□□□□□ -0.18
SMAD3-208ENST00000558827 ANKEF1Q9NU02 776 aa13.94□□□□□ -0.18
SMAD3-208ENST00000558827 DACT1Q9NYF0 836 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms