RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 EMC2Q15006 297 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 UGCGQ16739 394 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 TIGD5Q53EQ6 642 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.64□□□□□ -0.87
USP3-208ENST00000558285 CATSPER4Q7RTX7 472 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 LRRC71Q8N4P6 559 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 CNNM3Q8NE01 707 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 SYMPKQ92797 1274 aaKnown RBP9.64□□□□□ -0.87
USP3-208ENST00000558285 PGBD4Q96DM1 585 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 ADAM2Q99965 735 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 MRPL9Q9BYD2 267 aaKnown RBP9.64□□□□□ -0.87
USP3-208ENST00000558285 NT5C3AQ9H0P0 336 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 LMAN2LQ9H0V9 348 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 ERVK-5Q9HDB9 667 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 RGS18Q9NS28 235 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 TMEM161AQ9NX61 479 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 DBR1Q9UK59 544 aaKnown RBP9.64□□□□□ -0.87
USP3-208ENST00000558285 PCDHB12Q9Y5F1 795 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 ADGRA3Q8IWK6 1321 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 TRIP12Q14669 1992 aaPredicted RBP9.63□□□□□ -0.87
USP3-208ENST00000558285 IGKV6-21A0A0C4DH24 114 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 ARHGEF35A5YM69 484 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 K7ELQ4 463 aaPredicted RBP9.63□□□□□ -0.87
USP3-208ENST00000558285 EML1O00423 815 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 GPR32O75388 356 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 EOMESO95936 686 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 POU3F3P20264 500 aaPredicted RBP9.63□□□□□ -0.87
USP3-208ENST00000558285 RPA1P27694 616 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 AXLP30530 894 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 CCT6AP40227 531 aaKnown RBP9.63□□□□□ -0.87
USP3-208ENST00000558285 TECP42680 631 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 MRE11P49959 708 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 POU5F1BQ06416 359 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 PDE4CQ08493 712 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 ST3GAL1Q11201 340 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 CTTNQ14247 550 aaKnown RBP9.63□□□□□ -0.87
USP3-208ENST00000558285 SKIV2LQ15477 1246 aaKnown RBP9.63□□□□□ -0.87
USP3-208ENST00000558285 SPOUT1Q5T280 376 aaKnown RBP9.63□□□□□ -0.87
USP3-208ENST00000558285 ARL6IP4Q66PJ3 421 aaKnown RBP9.63□□□□□ -0.87
USP3-208ENST00000558285 ANO5Q75V66 913 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 ZBTB8OSQ8IWT0 167 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 RASSF8Q8NHQ8 419 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 GJA10Q969M2 543 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 VWCEQ96DN2 955 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 CCDC51Q96ER9 411 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 AK8Q96MA6 479 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 NLRP4Q96MN2 994 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 HSD17B14Q9BPX1 270 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 TMEM121BQ9BXQ6 578 aaPredicted RBP9.63□□□□□ -0.87
USP3-208ENST00000558285 C2orf40Q9H1Z8 148 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 DHX33Q9H6R0 707 aaKnown RBP9.63□□□□□ -0.87
USP3-208ENST00000558285 STK39Q9UEW8 545 aa9.63□□□□□ -0.87
USP3-208ENST00000558285 NOC2LQ9Y3T9 749 aaKnown RBP9.63□□□□□ -0.87
USP3-208ENST00000558285 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.62□□□□□ -0.87
USP3-208ENST00000558285 LINC01553A4QN01 128 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 VPS37CA5D8V6 355 aaPredicted RBP9.62□□□□□ -0.87
USP3-208ENST00000558285 EDIL3O43854 480 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 SLITRK3O94933 977 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 TXLNAP40222 546 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 SPIRE1Q08AE8 756 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 EARS2Q5JPH6 523 aaKnown RBP9.62□□□□□ -0.87
USP3-208ENST00000558285 TWF2Q6IBS0 349 aaKnown RBP9.62□□□□□ -0.87
USP3-208ENST00000558285 LINC01465Q8N7H1 131 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 IFT74Q96LB3 600 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 TIPINQ9BVW5 301 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 AGO3Q9H9G7 860 aaKnown RBP9.62□□□□□ -0.87
USP3-208ENST00000558285 UBN1Q9NPG3 1134 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 RGL1Q9NZL6 768 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 COG5Q9UP83 839 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 DNM3Q9UQ16 869 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 FAM205CA6NFA0 338 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 LPXNO60711 386 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 DGKIO75912 1065 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 MYOGP15173 224 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 LAG3P18627 525 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 SCP2P22307 547 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 CTNNB1P35222 781 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 PPM1AP35813 382 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 PTGDRQ13258 359 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 PLA2G4FQ68DD2 849 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 FAM228AQ86W67 206 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 TMEM192Q8IY95 271 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 LRRC43Q8N309 656 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 SNX29Q8TEQ0 813 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 CALML4Q96GE6 196 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 TMEM117Q9H0C3 514 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 ADAMTS10Q9H324 1103 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 ZSCAN16Q9H4T2 348 aaPredicted RBP9.62□□□□□ -0.87
USP3-208ENST00000558285 PUF60Q9UHX1 559 aaKnown RBP9.62□□□□□ -0.87
USP3-208ENST00000558285 FAM50BQ9Y247 325 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 COL4A6Q14031 1691 aa9.62□□□□□ -0.87
USP3-208ENST00000558285 SCN5AQ14524 2016 aa9.61□□□□□ -0.87
USP3-208ENST00000558285 NR1I2O75469 434 aa9.61□□□□□ -0.87
USP3-208ENST00000558285 SRGAP2CP0DJJ0 459 aa9.61□□□□□ -0.87
USP3-208ENST00000558285 SRGAP2BP0DMP2 458 aa9.61□□□□□ -0.87
USP3-208ENST00000558285 ABCD1P33897 745 aa9.61□□□□□ -0.87
USP3-208ENST00000558285 UBA7P41226 1012 aa9.61□□□□□ -0.87
USP3-208ENST00000558285 UBE3AQ05086 875 aa9.61□□□□□ -0.87
USP3-208ENST00000558285 LAMTOR4Q0VGL1 99 aa9.61□□□□□ -0.87
USP3-208ENST00000558285 GPM6BQ13491 265 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms