RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 NUDT3O95989 172 aa4.16□□□□□ -1.74
VPS13C-205ENST00000558088 BCAR1P56945 870 aa4.16□□□□□ -1.74
VPS13C-205ENST00000558088 PRAMEF9Q5VWM5 478 aa4.16□□□□□ -1.74
VPS13C-205ENST00000558088 KCNV1Q6PIU1 500 aa4.16□□□□□ -1.74
VPS13C-205ENST00000558088 BRAPQ7Z569 592 aa4.16□□□□□ -1.74
VPS13C-205ENST00000558088 BMP8AQ7Z5Y6 402 aa4.16□□□□□ -1.74
VPS13C-205ENST00000558088 MRGPREQ86SM8 312 aa4.16□□□□□ -1.74
VPS13C-205ENST00000558088 CLEC14AQ86T13 490 aa4.16□□□□□ -1.74
VPS13C-205ENST00000558088 ELOA2Q8IYF1 753 aaPredicted RBP4.16□□□□□ -1.74
VPS13C-205ENST00000558088 SLC7A14Q8TBB6 771 aa4.16□□□□□ -1.74
VPS13C-205ENST00000558088 PROKR1Q8TCW9 393 aa4.16□□□□□ -1.74
VPS13C-205ENST00000558088 LENG9Q96B70 501 aa4.16□□□□□ -1.74
VPS13C-205ENST00000558088 MAML3Q96JK9 1138 aa4.16□□□□□ -1.74
VPS13C-205ENST00000558088 DEPDC7Q96QD5 511 aa4.16□□□□□ -1.74
VPS13C-205ENST00000558088 TUBGCP5Q96RT8 1024 aa4.16□□□□□ -1.74
VPS13C-205ENST00000558088 MNTQ99583 582 aa4.16□□□□□ -1.74
VPS13C-205ENST00000558088 MRPL4Q9BYD3 311 aaKnown RBP4.16□□□□□ -1.74
VPS13C-205ENST00000558088 C14orf93Q9H972 538 aaKnown RBP4.16□□□□□ -1.74
VPS13C-205ENST00000558088 H7C1D1 291 aa4.15□□□□□ -1.75
VPS13C-205ENST00000558088 CYP17A1P05093 508 aa4.15□□□□□ -1.75
VPS13C-205ENST00000558088 LMO1P25800 156 aa4.15□□□□□ -1.75
VPS13C-205ENST00000558088 RANGAP1P46060 587 aaPredicted RBP4.15□□□□□ -1.75
VPS13C-205ENST00000558088 RABGGTBP53611 331 aa4.15□□□□□ -1.75
VPS13C-205ENST00000558088 ZNF174Q15697 407 aa4.15□□□□□ -1.75
VPS13C-205ENST00000558088 MAN2A1Q16706 1144 aa4.15□□□□□ -1.75
VPS13C-205ENST00000558088 Q6ZPA2 131 aa4.15□□□□□ -1.75
VPS13C-205ENST00000558088 OTOP1Q7RTM1 612 aa4.15□□□□□ -1.75
VPS13C-205ENST00000558088 ST8SIA2Q92186 375 aa4.15□□□□□ -1.75
VPS13C-205ENST00000558088 NKD2Q969F2 451 aaPredicted RBP4.15□□□□□ -1.75
VPS13C-205ENST00000558088 SCLYQ96I15 445 aa4.15□□□□□ -1.75
VPS13C-205ENST00000558088 ZNF512Q96ME7 567 aaPredicted RBP4.15□□□□□ -1.75
VPS13C-205ENST00000558088 EPC1Q9H2F5 836 aa4.15□□□□□ -1.75
VPS13C-205ENST00000558088 CABP5Q9NP86 173 aa4.15□□□□□ -1.75
VPS13C-205ENST00000558088 ZNHIT2Q9UHR6 403 aa4.15□□□□□ -1.75
VPS13C-205ENST00000558088 PACSIN3Q9UKS6 424 aa4.15□□□□□ -1.75
VPS13C-205ENST00000558088 KLRG2A4D1S0 409 aaPredicted RBP4.14□□□□□ -1.75
VPS13C-205ENST00000558088 ITGB1P05556 798 aa4.14□□□□□ -1.75
VPS13C-205ENST00000558088 GYPEP15421 78 aa4.14□□□□□ -1.75
VPS13C-205ENST00000558088 ANTXR2P58335 489 aa4.14□□□□□ -1.75
VPS13C-205ENST00000558088 SPIDRQ14159 915 aa4.14□□□□□ -1.75
VPS13C-205ENST00000558088 NAALADL2Q58DX5 795 aa4.14□□□□□ -1.75
VPS13C-205ENST00000558088 DCAF17Q5H9S7 520 aaPredicted RBP4.14□□□□□ -1.75
VPS13C-205ENST00000558088 MBNL2Q5VZF2 373 aaKnown RBP4.14□□□□□ -1.75
VPS13C-205ENST00000558088 TIGD7Q6NT04 549 aaPredicted RBP4.14□□□□□ -1.75
VPS13C-205ENST00000558088 LRRC55Q6ZSA7 311 aa4.14□□□□□ -1.75
VPS13C-205ENST00000558088 CMTM4Q8IZR5 234 aa4.14□□□□□ -1.75
VPS13C-205ENST00000558088 CHST14Q8NCH0 376 aa4.14□□□□□ -1.75
VPS13C-205ENST00000558088 MDGA1Q8NFP4 955 aa4.14□□□□□ -1.75
VPS13C-205ENST00000558088 CPT1CQ8TCG5 803 aa4.14□□□□□ -1.75
VPS13C-205ENST00000558088 THAP3Q8WTV1 239 aaPredicted RBP4.14□□□□□ -1.75
VPS13C-205ENST00000558088 VOPP1Q96AW1 172 aa4.14□□□□□ -1.75
VPS13C-205ENST00000558088 RIOX1Q9H6W3 641 aa4.14□□□□□ -1.75
VPS13C-205ENST00000558088 TRPS1Q9UHF7 1281 aa4.14□□□□□ -1.75
VPS13C-205ENST00000558088 DNAI1Q9UI46 699 aa4.14□□□□□ -1.75
VPS13C-205ENST00000558088 FZD1Q9UP38 647 aa4.14□□□□□ -1.75
VPS13C-205ENST00000558088 M0R2C6 588 aa4.13□□□□□ -1.75
VPS13C-205ENST00000558088 NRP1O14786 923 aa4.13□□□□□ -1.75
VPS13C-205ENST00000558088 KCNQ2O43526 872 aa4.13□□□□□ -1.75
VPS13C-205ENST00000558088 B3GALT2O43825 422 aa4.13□□□□□ -1.75
VPS13C-205ENST00000558088 LMNAP02545 664 aaKnown RBP4.13□□□□□ -1.75
VPS13C-205ENST00000558088 ZBTB48P10074 688 aaPredicted RBP4.13□□□□□ -1.75
VPS13C-205ENST00000558088 GTF2F1P35269 517 aaKnown RBP eCLIP4.13□□□□□ -1.75
VPS13C-205ENST00000558088 RBM25P49756 843 aaKnown RBP4.13□□□□□ -1.75
VPS13C-205ENST00000558088 ADAM8P78325 824 aa4.13□□□□□ -1.75
VPS13C-205ENST00000558088 MRPS21P82921 87 aaKnown RBP4.13□□□□□ -1.75
VPS13C-205ENST00000558088 COL10A1Q03692 680 aa4.13□□□□□ -1.75
VPS13C-205ENST00000558088 ADCY1Q08828 1119 aa4.13□□□□□ -1.75
VPS13C-205ENST00000558088 TIGD2Q4W5G0 525 aa4.13□□□□□ -1.75
VPS13C-205ENST00000558088 ABHD17CQ6PCB6 329 aa4.13□□□□□ -1.75
VPS13C-205ENST00000558088 HTR3DQ70Z44 454 aa4.13□□□□□ -1.75
VPS13C-205ENST00000558088 APBB1IPQ7Z5R6 666 aaPredicted RBP4.13□□□□□ -1.75
VPS13C-205ENST00000558088 C7orf31Q8N865 590 aa4.13□□□□□ -1.75
VPS13C-205ENST00000558088 UIMC1Q96RL1 719 aa4.13□□□□□ -1.75
VPS13C-205ENST00000558088 SRPK1Q96SB4 655 aaKnown RBP4.13□□□□□ -1.75
VPS13C-205ENST00000558088 CYP4F11Q9HBI6 524 aa4.13□□□□□ -1.75
VPS13C-205ENST00000558088 PTGFRNQ9P2B2 879 aa4.13□□□□□ -1.75
VPS13C-205ENST00000558088 SORCS3Q9UPU3 1222 aa4.13□□□□□ -1.75
VPS13C-205ENST00000558088 TRIM24O15164 1050 aa4.12□□□□□ -1.75
VPS13C-205ENST00000558088 MTSS1O43312 755 aa4.12□□□□□ -1.75
VPS13C-205ENST00000558088 FSBPO95073 299 aa4.12□□□□□ -1.75
VPS13C-205ENST00000558088 SCAF4O95104 1147 aaKnown RBP4.12□□□□□ -1.75
VPS13C-205ENST00000558088 ADRA1BP35368 520 aa4.12□□□□□ -1.75
VPS13C-205ENST00000558088 KIR2DL3P43628 341 aa4.12□□□□□ -1.75
VPS13C-205ENST00000558088 RASA3Q14644 834 aa4.12□□□□□ -1.75
VPS13C-205ENST00000558088 EPHA7Q15375 998 aa4.12□□□□□ -1.75
VPS13C-205ENST00000558088 CCDC142Q17RM4 750 aa4.12□□□□□ -1.75
VPS13C-205ENST00000558088 STRIP1Q5VSL9 837 aa4.12□□□□□ -1.75
VPS13C-205ENST00000558088 NAIF1Q69YI7 327 aaPredicted RBP4.12□□□□□ -1.75
VPS13C-205ENST00000558088 ZCCHC8Q6NZY4 707 aaKnown RBP4.12□□□□□ -1.75
VPS13C-205ENST00000558088 FGD2Q7Z6J4 655 aa4.12□□□□□ -1.75
VPS13C-205ENST00000558088 VRK3Q8IV63 474 aa4.12□□□□□ -1.75
VPS13C-205ENST00000558088 KIAA1958Q8N8K9 716 aa4.12□□□□□ -1.75
VPS13C-205ENST00000558088 DNAJC7Q99615 494 aa4.12□□□□□ -1.75
VPS13C-205ENST00000558088 SNTG2Q9NY99 539 aa4.12□□□□□ -1.75
VPS13C-205ENST00000558088 SAMD15Q9P1V8 674 aa4.12□□□□□ -1.75
VPS13C-205ENST00000558088 EIF2B4Q9UI10 523 aaKnown RBP4.12□□□□□ -1.75
VPS13C-205ENST00000558088 TNPO3Q9Y5L0 923 aaKnown RBP4.12□□□□□ -1.75
VPS13C-205ENST00000558088 PTPDC1A2A3K4 754 aa4.11□□□□□ -1.75
VPS13C-205ENST00000558088 APOL3O95236 402 aa4.11□□□□□ -1.75
VPS13C-205ENST00000558088 HNRNPLP14866 589 aaKnown RBP eCLIP4.11□□□□□ -1.753e-7■■■■□ 23.3
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms