RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 LINC01599Q8WXQ3 324 aa11.87□□□□□ -0.51
LINC00239-201ENST00000556973 CDK5RAP3Q96JB5 506 aa11.87□□□□□ -0.51
LINC00239-201ENST00000556973 ZNF396Q96N95 335 aaPredicted RBP11.87□□□□□ -0.51
LINC00239-201ENST00000556973 YME1L1Q96TA2 773 aa11.87□□□□□ -0.51
LINC00239-201ENST00000556973 DACT1Q9NYF0 836 aa11.87□□□□□ -0.51
LINC00239-201ENST00000556973 LRFN2Q9ULH4 789 aa11.87□□□□□ -0.51
LINC00239-201ENST00000556973 PCDHB7Q9Y5E2 793 aa11.87□□□□□ -0.51
LINC00239-201ENST00000556973 SRPRBQ9Y5M8 271 aaKnown RBP11.87□□□□□ -0.51
LINC00239-201ENST00000556973 C9IYK1 514 aa11.86□□□□□ -0.51
LINC00239-201ENST00000556973 CSDE1O75534 798 aaKnown RBP11.86□□□□□ -0.51
LINC00239-201ENST00000556973 SLC34A2O95436 690 aa11.86□□□□□ -0.51
LINC00239-201ENST00000556973 F13A1P00488 732 aa11.86□□□□□ -0.51
LINC00239-201ENST00000556973 FGFR4P22455 802 aa11.86□□□□□ -0.51
LINC00239-201ENST00000556973 GLRA2P23416 452 aa11.86□□□□□ -0.51
LINC00239-201ENST00000556973 PHKA2P46019 1235 aa11.86□□□□□ -0.51
LINC00239-201ENST00000556973 NASPP49321 788 aaPredicted RBP11.86□□□□□ -0.51
LINC00239-201ENST00000556973 PTENP60484 403 aa11.86□□□□□ -0.51
LINC00239-201ENST00000556973 TAP1Q03518 808 aa11.86□□□□□ -0.51
LINC00239-201ENST00000556973 CEBPZQ03701 1054 aaKnown RBP11.86□□□□□ -0.51
LINC00239-201ENST00000556973 GRB10Q13322 594 aa11.86□□□□□ -0.51
LINC00239-201ENST00000556973 GRIN2CQ14957 1233 aa11.86□□□□□ -0.51
LINC00239-201ENST00000556973 PCBP1Q15365 356 aaKnown RBP eCLIP11.86□□□□□ -0.51
LINC00239-201ENST00000556973 ZRSR1Q15695 479 aaKnown RBP11.86□□□□□ -0.51
LINC00239-201ENST00000556973 MAEAQ7L5Y9 396 aa11.86□□□□□ -0.51
LINC00239-201ENST00000556973 IFNLR1Q8IU57 520 aaPredicted RBP11.86□□□□□ -0.51
LINC00239-201ENST00000556973 SP7Q8TDD2 431 aaPredicted RBP11.86□□□□□ -0.51
LINC00239-201ENST00000556973 ZNF689Q96CS4 500 aaPredicted RBP11.86□□□□□ -0.51
LINC00239-201ENST00000556973 CALML4Q96GE6 196 aa11.86□□□□□ -0.51
LINC00239-201ENST00000556973 GUCD1Q96NT3 240 aa11.86□□□□□ -0.51
LINC00239-201ENST00000556973 PNMA5Q96PV4 448 aa11.86□□□□□ -0.51
LINC00239-201ENST00000556973 USP28Q96RU2 1077 aa11.86□□□□□ -0.51
LINC00239-201ENST00000556973 CDX2Q99626 313 aaPredicted RBP11.86□□□□□ -0.51
LINC00239-201ENST00000556973 NFKBIZQ9BYH8 718 aa11.86□□□□□ -0.51
LINC00239-201ENST00000556973 POLR3FQ9H1D9 316 aaPredicted RBP11.86□□□□□ -0.51
LINC00239-201ENST00000556973 ELAC1Q9H777 363 aaKnown RBP11.86□□□□□ -0.51
LINC00239-201ENST00000556973 LCHNA4D1U4 455 aa11.85□□□□□ -0.51
LINC00239-201ENST00000556973 MARCKSP29966 332 aaPredicted RBP11.85□□□□□ -0.51
LINC00239-201ENST00000556973 GRIN1Q05586 938 aa11.85□□□□□ -0.51
LINC00239-201ENST00000556973 NCBP1Q09161 790 aaKnown RBP11.85□□□□□ -0.51
LINC00239-201ENST00000556973 CAPSQ13938 189 aa11.85□□□□□ -0.51
LINC00239-201ENST00000556973 FAM102BQ5T8I3 360 aa11.85□□□□□ -0.51
LINC00239-201ENST00000556973 FOXD4L5Q5VV16 416 aaPredicted RBP11.85□□□□□ -0.51
LINC00239-201ENST00000556973 ATL3Q6DD88 541 aa11.85□□□□□ -0.51
LINC00239-201ENST00000556973 CATSPER4Q7RTX7 472 aa11.85□□□□□ -0.51
LINC00239-201ENST00000556973 SYT2Q8N9I0 419 aaPredicted RBP11.85□□□□□ -0.51
LINC00239-201ENST00000556973 ASAP3Q8TDY4 903 aa11.85□□□□□ -0.51
LINC00239-201ENST00000556973 FOXD4L4Q8WXT5 416 aaPredicted RBP11.85□□□□□ -0.51
LINC00239-201ENST00000556973 KIFAP3Q92845 792 aa11.85□□□□□ -0.51
LINC00239-201ENST00000556973 PLIN2Q99541 437 aa11.85□□□□□ -0.51
LINC00239-201ENST00000556973 TRAIPQ9BWF2 469 aa11.85□□□□□ -0.51
LINC00239-201ENST00000556973 CCSER1Q9C0I3 900 aa11.85□□□□□ -0.51
LINC00239-201ENST00000556973 CSRNP2Q9H175 543 aa11.85□□□□□ -0.51
LINC00239-201ENST00000556973 GPRC5CQ9NQ84 441 aa11.85□□□□□ -0.51
LINC00239-201ENST00000556973 TMEM161AQ9NX61 479 aa11.85□□□□□ -0.51
LINC00239-201ENST00000556973 TFIP11Q9UBB9 837 aaKnown RBP11.85□□□□□ -0.51
LINC00239-201ENST00000556973 FBXO2Q9UK22 296 aaPredicted RBP11.85□□□□□ -0.51
LINC00239-201ENST00000556973 LAMA2P24043 3122 aaKnown RBP11.85□□□□□ -0.51
LINC00239-201ENST00000556973 RALGAPA2Q2PPJ7 1873 aa11.85□□□□□ -0.51
LINC00239-201ENST00000556973 COL4A6Q14031 1691 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 A0A0U1RQF3 1178 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 LINC01553A4QN01 128 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 PPP6R2O75170 966 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 YEATS4O95619 227 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 EOMESO95936 686 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 SKIP12755 728 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 AXLP30530 894 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 ERVK-21P61565 698 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 PKP1Q13835 747 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 PPP2R5AQ15172 486 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 STK38Q15208 465 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 TMEM119Q4V9L6 283 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 RINT1Q6NUQ1 792 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 C1orf186Q6ZWK4 172 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 KCNK18Q7Z418 384 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 FIBCD1Q8N539 461 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 KRI1Q8N9T8 703 aaKnown RBP11.84□□□□□ -0.51
LINC00239-201ENST00000556973 LINC00301Q8NCQ3 95 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 IFT74Q96LB3 600 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 SAMD11Q96NU1 681 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 TGS1Q96RS0 853 aaKnown RBP11.84□□□□□ -0.51
LINC00239-201ENST00000556973 TIPINQ9BVW5 301 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 PRDM12Q9H4Q4 367 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 MINDY3Q9H8M7 445 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 AGPAT5Q9NUQ2 364 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 KCND2Q9NZV8 630 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 CCDC39Q9UFE4 941 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 KCNG1Q9UIX4 513 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 CFAP45Q9UL16 551 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 STXBP5LQ9Y2K9 1186 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 FNDC1Q4ZHG4 1894 aaPredicted RBP11.84□□□□□ -0.51
LINC00239-201ENST00000556973 NLRC5Q86WI3 1866 aa11.84□□□□□ -0.51
LINC00239-201ENST00000556973 INO80B-WBP1J3KQ70 363 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 SPTLC2O15270 562 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 ERLIN2O94905 339 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 ARHGEF15O94989 841 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 PLA2G4BP0C869 781 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 GUCY2CP25092 1073 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 DDIT3P35638 169 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 NAMPTP43490 491 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 SLC12A3P55017 1021 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms