RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ZBED1O96006 694 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 PFKPQ01813 784 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 ARL13BQ3SXY8 428 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 VWA3BQ502W6 1294 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 METTL21CQ5VZV1 264 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 NGDNQ8NEJ9 315 aaKnown RBP14.82□□□□□ -0.04
SHMT2-226ENST00000556825 SKA1Q96BD8 255 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 GPR101Q96P66 508 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-226ENST00000556825 UBAC1Q9BSL1 405 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 FHDC1Q9C0D6 1143 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-226ENST00000556825 AIPL1Q9NZN9 384 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 STX8Q9UNK0 236 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 PCDHB2Q9Y5E7 798 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 NUMBLQ9Y6R0 609 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 BCL9LQ86UU0 1499 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 RGS16O15492 202 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-226ENST00000556825 TBX10O75333 385 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 MTRF1O75570 445 aaKnown RBP14.82□□□□□ -0.04
SHMT2-226ENST00000556825 PSMG1O95456 288 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 NUDT17P0C025 328 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 SLC39A6Q13433 755 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 PARP10Q53GL7 1025 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 KRT26Q7Z3Y9 468 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 AACSQ86V21 672 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 VPS37DQ86XT2 251 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 USP38Q8NB14 1042 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 PSTPIP2Q9H939 334 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 USP29Q9HBJ7 922 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 RWDD2AQ9UIY3 292 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 NPHP3-ACAD11A0A0J9YXS1 232 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 TBKBP1A7MCY6 615 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 LGALS16A8MUM7 142 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 TNFRSF10AO00220 468 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 CYTH3O43739 400 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 OPHN1O60890 802 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 KRT36O76013 467 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 TARSP26639 723 aaKnown RBP14.81□□□□□ -0.04
SHMT2-226ENST00000556825 TUBA1BP68363 451 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 IFI35P80217 286 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-226ENST00000556825 MKRN3Q13064 507 aaKnown RBP14.81□□□□□ -0.04
SHMT2-226ENST00000556825 ZBTB17Q13105 803 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 EIF4A2Q14240 407 aaKnown RBP14.81□□□□□ -0.04
SHMT2-226ENST00000556825 C1orf228Q6PIY5 440 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 TUBA1AQ71U36 451 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 PHLDB2Q86SQ0 1253 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 ZNF280CQ8ND82 737 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 ZNF507Q8TCN5 953 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 HPS3Q969F9 1004 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 INPP4AQ96PE3 977 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-226ENST00000556825 GSDMAQ96QA5 445 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 AZI2Q9H6S1 392 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.81□□□□□ -0.045e-12■■□□□ 11.4
SHMT2-226ENST00000556825 ZNHIT2Q9UHR6 403 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 TRIM64CA6NLI5 447 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 PJA2O43164 708 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 FBXO21O94952 628 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 MSL3P1P0C860 447 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 DPYDQ12882 1025 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 E2F2Q14209 437 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 GRM2Q14416 872 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 ZNF423Q2M1K9 1284 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 CTC1Q2NKJ3 1217 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 C6orf118Q5T5N4 469 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 SNRNP48Q6IEG0 339 aaKnown RBP14.81□□□□□ -0.04
SHMT2-226ENST00000556825 CROCCP2Q86T23 111 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 SMYD4Q8IYR2 804 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-226ENST00000556825 FBXL16Q8N461 479 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 CCDC127Q96BQ5 260 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 NOX5Q96PH1 765 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 TXLNGYQ9BZA5 131 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 TTYH3Q9C0H2 523 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 KIAA1683Q9H0B3 1180 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 AGPAT5Q9NUQ2 364 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 SELENONQ9NZV5 590 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 MYH2Q9UKX2 1941 aa14.81□□□□□ -0.04
SHMT2-226ENST00000556825 HGSO14964 777 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-226ENST00000556825 RNASEH1O60930 286 aaKnown RBP14.8□□□□□ -0.04
SHMT2-226ENST00000556825 NAA20P61599 178 aa14.8□□□□□ -0.04
SHMT2-226ENST00000556825 TUBA4AP68366 448 aa14.8□□□□□ -0.04
SHMT2-226ENST00000556825 IL23RQ5VWK5 629 aa14.8□□□□□ -0.04
SHMT2-226ENST00000556825 ZNF579Q8NAF0 562 aaKnown RBP14.8□□□□□ -0.04
SHMT2-226ENST00000556825 USP6NLQ92738 828 aa14.8□□□□□ -0.04
SHMT2-226ENST00000556825 GRAMD1AQ96CP6 724 aa14.8□□□□□ -0.04
SHMT2-226ENST00000556825 ANKRD36BP1Q96IX9 119 aa14.8□□□□□ -0.04
SHMT2-226ENST00000556825 MTUS1Q9ULD2 1270 aa14.8□□□□□ -0.04
SHMT2-226ENST00000556825 TELO2Q9Y4R8 837 aa14.8□□□□□ -0.04
SHMT2-226ENST00000556825 ZBED4O75132 1171 aa14.8□□□□□ -0.04
SHMT2-226ENST00000556825 PTPREP23469 700 aa14.8□□□□□ -0.04
SHMT2-226ENST00000556825 DSG1Q02413 1049 aa14.8□□□□□ -0.04
SHMT2-226ENST00000556825 RBM44Q6ZP01 1051 aaKnown RBP14.8□□□□□ -0.04
SHMT2-226ENST00000556825 CAPN12Q6ZSI9 719 aa14.8□□□□□ -0.04
SHMT2-226ENST00000556825 ACAD11Q709F0 780 aa14.8□□□□□ -0.04
SHMT2-226ENST00000556825 MCM10Q7L590 875 aa14.8□□□□□ -0.04
SHMT2-226ENST00000556825 ARHGAP24Q8N264 748 aa14.8□□□□□ -0.04
SHMT2-226ENST00000556825 COX4I2Q96KJ9 171 aa14.8□□□□□ -0.04
SHMT2-226ENST00000556825 STMN4Q9H169 189 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-226ENST00000556825 TCP11L1Q9NUJ3 509 aa14.8□□□□□ -0.04
SHMT2-226ENST00000556825 FBXO2Q9UK22 296 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-226ENST00000556825 FAM47E-STBD1D6RA91 191 aa14.79□□□□□ -0.04
SHMT2-226ENST00000556825 T-ENOLP0DO92 83 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms