RNA–Protein interactions for RNA: ENST00000554873.5

SYNE3-203, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 5 BASIC

Gene SYNE3, Length 2,826 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-203ENST00000554873 ARHGAP18Q8N392 663 aa16.88■□□□□ 0.29
SYNE3-203ENST00000554873 DESP17661 470 aa16.88■□□□□ 0.29
SYNE3-203ENST00000554873 ALDH1B1P30837 517 aa16.88■□□□□ 0.29
SYNE3-203ENST00000554873 GRIK5Q16478 980 aa16.88■□□□□ 0.29
SYNE3-203ENST00000554873 CCDC88AQ3V6T2 1871 aa16.88■□□□□ 0.29
SYNE3-203ENST00000554873 COL23A1Q86Y22 540 aaPredicted RBP16.88■□□□□ 0.29
SYNE3-203ENST00000554873 AZIN2Q96A70 460 aa16.88■□□□□ 0.29
SYNE3-203ENST00000554873 SLITRK6Q9H5Y7 841 aa16.88■□□□□ 0.29
SYNE3-203ENST00000554873 SAP30BPQ9UHR5 308 aaKnown RBP16.88■□□□□ 0.29
SYNE3-203ENST00000554873 SLC4A7Q9Y6M7 1214 aa16.88■□□□□ 0.29
SYNE3-203ENST00000554873 PVALEFA0A1B0GWK0 134 aa16.88■□□□□ 0.29
SYNE3-203ENST00000554873 KCNQ4P56696 695 aa16.88■□□□□ 0.29
SYNE3-203ENST00000554873 CNGA2Q16280 664 aa16.88■□□□□ 0.29
SYNE3-203ENST00000554873 GBP5Q96PP8 586 aa16.88■□□□□ 0.29
SYNE3-203ENST00000554873 FMO2Q99518 471 aa16.88■□□□□ 0.29
SYNE3-203ENST00000554873 DDX47Q9H0S4 455 aaKnown RBP16.88■□□□□ 0.29
SYNE3-203ENST00000554873 AZI2Q9H6S1 392 aa16.88■□□□□ 0.29
SYNE3-203ENST00000554873 TXLNGQ9NUQ3 528 aa16.88■□□□□ 0.29
SYNE3-203ENST00000554873 FGFR1OP2Q9NVK5 253 aa16.88■□□□□ 0.29
SYNE3-203ENST00000554873 TMEM260Q9NX78 707 aa16.88■□□□□ 0.29
SYNE3-203ENST00000554873 ROBO3Q96MS0 1386 aa16.87■□□□□ 0.29
SYNE3-203ENST00000554873 COL14A1Q05707 1796 aaKnown RBP16.87■□□□□ 0.29
SYNE3-203ENST00000554873 KCNQ2O43526 872 aa16.87■□□□□ 0.29
SYNE3-203ENST00000554873 LDHBP07195 334 aaKnown RBP16.87■□□□□ 0.29
SYNE3-203ENST00000554873 KLRC1P26715 233 aa16.87■□□□□ 0.29
SYNE3-203ENST00000554873 CROCCP2Q86T23 111 aa16.87■□□□□ 0.29
SYNE3-203ENST00000554873 GUF1Q8N442 669 aaKnown RBP16.87■□□□□ 0.29
SYNE3-203ENST00000554873 SH3TC2Q8TF17 1288 aa16.87■□□□□ 0.29
SYNE3-203ENST00000554873 ZNF333Q96JL9 665 aa16.87■□□□□ 0.29
SYNE3-203ENST00000554873 MTMR9Q96QG7 549 aa16.87■□□□□ 0.29
SYNE3-203ENST00000554873 TLDC2A0PJX2 215 aa16.87■□□□□ 0.29
SYNE3-203ENST00000554873 PGRMC1O00264 195 aaKnown RBP16.87■□□□□ 0.29
SYNE3-203ENST00000554873 CEP104O60308 925 aa16.87■□□□□ 0.29
SYNE3-203ENST00000554873 IFI35P80217 286 aaPredicted RBP16.87■□□□□ 0.29
SYNE3-203ENST00000554873 SOGA3Q5TF21 947 aa16.87■□□□□ 0.29
SYNE3-203ENST00000554873 PDXDC1Q6P996 788 aa16.87■□□□□ 0.29
SYNE3-203ENST00000554873 LRRC55Q6ZSA7 311 aa16.87■□□□□ 0.29
SYNE3-203ENST00000554873 MAPKAPK5Q8IW41 473 aa16.87■□□□□ 0.29
SYNE3-203ENST00000554873 AGGF1Q8N302 714 aaeCLIP16.87■□□□□ 0.298e-11■■■■■ 48.3
SYNE3-203ENST00000554873 PROCA1Q8NCQ7 364 aaPredicted RBP16.87■□□□□ 0.29
SYNE3-203ENST00000554873 GLIS3Q8NEA6 775 aa16.87■□□□□ 0.29
SYNE3-203ENST00000554873 DDX23Q9BUQ8 820 aaKnown RBP16.87■□□□□ 0.29
SYNE3-203ENST00000554873 AP1M1Q9BXS5 423 aa16.87■□□□□ 0.29
SYNE3-203ENST00000554873 UTP11Q9Y3A2 253 aaKnown RBP16.87■□□□□ 0.29
SYNE3-203ENST00000554873 IRS2Q9Y4H2 1338 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 NVLO15381 856 aaKnown RBP16.86■□□□□ 0.29
SYNE3-203ENST00000554873 MAGEA10P43363 369 aaPredicted RBP16.86■□□□□ 0.29
SYNE3-203ENST00000554873 CACNA2D1P54289 1103 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 CCDC15Q0P6D6 951 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 KCNMA1Q12791 1236 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 LRRC41Q15345 812 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 TDRD12Q587J7 1177 aaKnown RBP16.86■□□□□ 0.29
SYNE3-203ENST00000554873 C6orf118Q5T5N4 469 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 HGSNATQ68CP4 663 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 LINC00116Q8NCU8 138 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 NEK9Q8TD19 979 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 NCSTNQ92542 709 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 LARP4BQ92615 738 aaKnown RBP16.86■□□□□ 0.29
SYNE3-203ENST00000554873 PIGSQ96S52 555 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 SLX1AQ9BQ83 275 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 STMN4Q9H169 189 aaPredicted RBP16.86■□□□□ 0.29
SYNE3-203ENST00000554873 LRMDAQ9H2I8 198 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 PICK1Q9NRD5 415 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 PDP2Q9P2J9 529 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 PRKAG3Q9UGI9 489 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 AMACRQ9UHK6 382 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 ABCB11O95342 1321 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 FGFR1OPO95684 399 aaKnown RBP16.86■□□□□ 0.29
SYNE3-203ENST00000554873 SERPINB4P48594 390 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 DENND2CQ68D51 928 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 NUDT12Q9BQG2 462 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 PPP1R12CQ9BZL4 782 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 EPB41L4BQ9H329 900 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 PABPC3Q9H361 631 aaKnown RBP16.86■□□□□ 0.29
SYNE3-203ENST00000554873 STK17AQ9UEE5 414 aa16.86■□□□□ 0.29
SYNE3-203ENST00000554873 TCP11X1B4DZS4 312 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 ATP5HO75947 161 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 OATP04181 439 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 SKIP12755 728 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 GM2AP17900 193 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 SETDB1Q15047 1291 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 WASHC2DQ5SRD0 308 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 SLC51AQ86UW1 340 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 REXO1Q8N1G1 1221 aaKnown RBP16.85■□□□□ 0.29
SYNE3-203ENST00000554873 LZICQ8WZA0 190 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.85■□□□□ 0.294e-6■□□□□ 8
SYNE3-203ENST00000554873 CDCA7Q9BWT1 371 aaPredicted RBP16.85■□□□□ 0.29
SYNE3-203ENST00000554873 MROH7Q68CQ1 1323 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 MAGEA13PA6NCF6 341 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 KRIT1O00522 736 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 EDIL3O43854 480 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 LGR5O75473 907 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 KCNA3P22001 575 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 RXRBP28702 533 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 LRRC63Q05C16 580 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 RCN2Q14257 317 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 CALCRLQ16602 461 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 FAM13CQ8NE31 585 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 CFAP61Q8NHU2 1237 aa16.85■□□□□ 0.29
SYNE3-203ENST00000554873 ATP8B4Q8TF62 1192 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms