RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 CAP1Q01518 475 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 MCL1Q07820 350 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 MAP4K2Q12851 820 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 GRB10Q13322 594 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 HLTFQ14527 1009 aaKnown RBP eCLIP4.73□□□□□ -1.65
LIMA1-208ENST00000551691 SSPNQ14714 243 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 PCBP1Q15365 356 aaKnown RBP eCLIP4.73□□□□□ -1.65
LIMA1-208ENST00000551691 DPY19L1Q2PZI1 675 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 CDCA2Q69YH5 1023 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-208ENST00000551691 KSR2Q6VAB6 950 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 MOB2Q70IA6 237 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 FGD2Q7Z6J4 655 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 OXR1Q8N573 874 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 DEFB123Q8N688 67 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 CNTD1Q8N815 330 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 PANK1Q8TE04 598 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 DPF3Q92784 378 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 MASTLQ96GX5 879 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 COG3Q96JB2 828 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 MPHOSPH6Q99547 160 aaKnown RBP4.73□□□□□ -1.65
LIMA1-208ENST00000551691 ALG1Q9BT22 464 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 KRTAP9-3Q9BYQ3 159 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 GPR62Q9BZJ7 368 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 SLC6A17Q9H1V8 727 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 PRO3102Q9H379 93 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 ZCCHC4Q9H5U6 513 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 TRIM39Q9HCM9 518 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 LUC7LQ9NQ29 371 aaKnown RBP4.73□□□□□ -1.65
LIMA1-208ENST00000551691 ADARB2Q9NS39 739 aaKnown RBP4.73□□□□□ -1.65
LIMA1-208ENST00000551691 GPRC5DQ9NZD1 345 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 PGAP2Q9UHJ9 254 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 ZNF180Q9UJW8 692 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 TRHDEQ9UKU6 1024 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 CNOT6Q9ULM6 557 aaKnown RBP4.73□□□□□ -1.65
LIMA1-208ENST00000551691 NOB1Q9ULX3 412 aaKnown RBP4.73□□□□□ -1.65
LIMA1-208ENST00000551691 ZBTB1Q9Y2K1 713 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 SPEF1Q9Y4P9 236 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 FHOD1Q9Y613 1164 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 INSRP06213 1382 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 LAMA2P24043 3122 aaKnown RBP4.72□□□□□ -1.65
LIMA1-208ENST00000551691 AKAP11Q9UKA4 1901 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 A0A087WZG4 1122 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 ERVV-2B6SEH9 535 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 ADM5C9JUS6 153 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 MEIS1O00470 390 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 DLX3O60479 287 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 USP2O75604 605 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-208ENST00000551691 SNUPNO95149 360 aaKnown RBP4.72□□□□□ -1.65
LIMA1-208ENST00000551691 CRTAMO95727 393 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 POU3F2P20265 443 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-208ENST00000551691 GMPSP49915 693 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-208ENST00000551691 GFRA1P56159 465 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 POU4F1Q01851 419 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 TEKQ02763 1124 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 CLEC16AQ2KHT3 1053 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 ZCCHC8Q6NZY4 707 aaKnown RBP4.72□□□□□ -1.65
LIMA1-208ENST00000551691 HDGFL2Q7Z4V5 671 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-208ENST00000551691 PPIL6Q8IXY8 311 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 SMC5Q8IY18 1101 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 ARHGEF39Q8N4T4 335 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 C2orf69Q8N8R5 385 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 TMEM145Q8NBT3 493 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 SYTL5Q8TDW5 730 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-208ENST00000551691 DCAF4Q8WV16 495 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 RNF141Q8WVD5 230 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 HOOK2Q96ED9 719 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 MRGPRX3Q96LB0 322 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 NKX2-4Q9H2Z4 354 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 GBA2Q9HCG7 927 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-208ENST00000551691 GCM1Q9NP62 436 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 SAMD15Q9P1V8 674 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 STAP2Q9UGK3 403 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 KCNH3Q9ULD8 1083 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 SCAF8Q9UPN6 1271 aaKnown RBP4.72□□□□□ -1.65
LIMA1-208ENST00000551691 YBX2Q9Y2T7 364 aaKnown RBP4.72□□□□□ -1.65
LIMA1-208ENST00000551691 TRAF6Q9Y4K3 522 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 TRIM17Q9Y577 477 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 COL11A2P13942 1736 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-208ENST00000551691 COL5A3P25940 1745 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-208ENST00000551691 NRXN2Q9P2S2 1712 aa4.72□□□□□ -1.65
LIMA1-208ENST00000551691 A0A0G2JLL6 359 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-208ENST00000551691 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-208ENST00000551691 TCRBV16S1A1N1A0A5B0 115 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 FITM1A5D6W6 292 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 AKAP10O43572 662 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 FKTNO75072 461 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 EYA4O95677 639 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 NBPF7P0C2Y1 421 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-208ENST00000551691 RPL10P27635 214 aaKnown RBP4.71□□□□□ -1.66
LIMA1-208ENST00000551691 PLA2G5P39877 138 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 ZNF445P59923 1031 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 ST5P78524 1137 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 CXCL9Q07325 125 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 SCRN1Q12765 414 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 FAPQ12884 760 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 SLC39A6Q13433 755 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 UBE4AQ14139 1066 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 MLC1Q15049 377 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 LRRC41Q15345 812 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 PTPN21Q16825 1174 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms