RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 GPR161Q8N6U8 529 aaKnown RBP16.46■□□□□ 0.23
VPS29-209ENST00000551655 SDF4Q9BRK5 362 aa16.46■□□□□ 0.23
VPS29-209ENST00000551655 RPP25Q9BUL9 199 aaKnown RBP16.46■□□□□ 0.23
VPS29-209ENST00000551655 GBP3Q9H0R5 595 aa16.46■□□□□ 0.23
VPS29-209ENST00000551655 NRDE2Q9H7Z3 1164 aa16.46■□□□□ 0.23
VPS29-209ENST00000551655 WDR6Q9NNW5 1121 aaKnown RBP16.46■□□□□ 0.23
VPS29-209ENST00000551655 RCAN3Q9UKA8 241 aa16.46■□□□□ 0.23
VPS29-209ENST00000551655 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.46■□□□□ 0.23
VPS29-209ENST00000551655 ZZEF1O43149 2961 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 ASPMQ8IZT6 3477 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 IGKV6D-21A0A0A0MT36 114 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 CCDC195A0A1B0GUA6 201 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 MEIS3P2A8K0S8 358 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 LAMTOR5O43504 91 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 RFPL2O75678 378 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 ATG7O95352 703 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 GALTP07902 379 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 SLC11A1P49279 550 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 NLRP11P59045 1033 aaKnown RBP16.45■□□□□ 0.22
VPS29-209ENST00000551655 GIT2Q14161 759 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 ZNF528Q3MIS6 628 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 FAM43BQ6ZT52 329 aaPredicted RBP16.45■□□□□ 0.22
VPS29-209ENST00000551655 ATRIPQ8WXE1 791 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 PGBD1Q96JS3 809 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 MXRA8Q9BRK3 442 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 MYL10Q9BUA6 226 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 MRPL9Q9BYD2 267 aaKnown RBP16.45■□□□□ 0.22
VPS29-209ENST00000551655 EPC1Q9H2F5 836 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 PSTPIP2Q9H939 334 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 PCDHA6Q9UN73 950 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 PCDHA8Q9Y5H6 950 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 NUMBLQ9Y6R0 609 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 COL1A2P08123 1366 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 NFASCO94856 1347 aa16.45■□□□□ 0.22
VPS29-209ENST00000551655 A0A0U1RQF3 1178 aa16.44■□□□□ 0.22
VPS29-209ENST00000551655 hCG_1642624A0A1W2PR95 340 aa16.44■□□□□ 0.22
VPS29-209ENST00000551655 C2CD2LO14523 706 aa16.44■□□□□ 0.22
VPS29-209ENST00000551655 IFIT3O14879 490 aaKnown RBP16.44■□□□□ 0.22
VPS29-209ENST00000551655 INPPL1O15357 1258 aa16.44■□□□□ 0.22
VPS29-209ENST00000551655 CSDE1O75534 798 aaKnown RBP16.44■□□□□ 0.22
VPS29-209ENST00000551655 SPEM2Q0P670 501 aa16.44■□□□□ 0.22
VPS29-209ENST00000551655 SNW1Q13573 536 aaKnown RBP16.44■□□□□ 0.22
VPS29-209ENST00000551655 LPAL2Q16609 132 aa16.44■□□□□ 0.22
VPS29-209ENST00000551655 ZNF484Q5JVG2 852 aa16.44■□□□□ 0.22
VPS29-209ENST00000551655 GET4Q7L5D6 327 aaPredicted RBP16.44■□□□□ 0.22
VPS29-209ENST00000551655 CMTR1Q8N1G2 835 aaKnown RBP16.44■□□□□ 0.22
VPS29-209ENST00000551655 RRP36Q96EU6 259 aaKnown RBP16.44■□□□□ 0.22
VPS29-209ENST00000551655 EMILIN2Q9BXX0 1053 aa16.44■□□□□ 0.22
VPS29-209ENST00000551655 ADAMTS10Q9H324 1103 aa16.44■□□□□ 0.22
VPS29-209ENST00000551655 FBXO4Q9UKT5 387 aa16.44■□□□□ 0.22
VPS29-209ENST00000551655 INPP5FQ9Y2H2 1132 aa16.44■□□□□ 0.22
VPS29-209ENST00000551655 PCDHGA2Q9Y5H1 932 aa16.44■□□□□ 0.22
VPS29-209ENST00000551655 CD72P21854 359 aa16.43■□□□□ 0.22
VPS29-209ENST00000551655 STARD6P59095 220 aa16.43■□□□□ 0.22
VPS29-209ENST00000551655 GPC5P78333 572 aa16.43■□□□□ 0.22
VPS29-209ENST00000551655 HTR4Q13639 388 aa16.43■□□□□ 0.22
VPS29-209ENST00000551655 UBXN2BQ14CS0 331 aa16.43■□□□□ 0.22
VPS29-209ENST00000551655 PDXDC2PQ6P474 469 aa16.43■□□□□ 0.22
VPS29-209ENST00000551655 ABHD15Q6UXT9 468 aa16.43■□□□□ 0.22
VPS29-209ENST00000551655 LRRC71Q8N4P6 559 aa16.43■□□□□ 0.22
VPS29-209ENST00000551655 ZBTB44Q8NCP5 570 aa16.43■□□□□ 0.22
VPS29-209ENST00000551655 BBXQ8WY36 941 aaPredicted RBP16.43■□□□□ 0.22
VPS29-209ENST00000551655 SECISBP2LQ93073 1101 aaKnown RBP16.43■□□□□ 0.22
VPS29-209ENST00000551655 IL25Q9H293 177 aa16.43■□□□□ 0.22
VPS29-209ENST00000551655 AGO4Q9HCK5 861 aaKnown RBP16.43■□□□□ 0.22
VPS29-209ENST00000551655 SLC2A4RGQ9NR83 387 aa16.43■□□□□ 0.22
VPS29-209ENST00000551655 TBC1D13Q9NVG8 400 aa16.43■□□□□ 0.22
VPS29-209ENST00000551655 AKT3Q9Y243 479 aa16.43■□□□□ 0.22
VPS29-209ENST00000551655 ANKRD11Q6UB99 2663 aaPredicted RBP16.43■□□□□ 0.22
VPS29-209ENST00000551655 ZFYVE26Q68DK2 2539 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.42■□□□□ 0.22
VPS29-209ENST00000551655 SPDYE3A6NKU9 549 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 ANHXE9PGG2 379 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 MAFGO15525 162 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 LILRB3O75022 631 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 LILRB5O75023 590 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 PLEKHA8P1O95397 391 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 SPATA31D3P0C874 917 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 LAMP2P13473 410 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 EIF4BP23588 611 aaKnown RBP16.42■□□□□ 0.22
VPS29-209ENST00000551655 SLC26A2P50443 739 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 FAM160B1Q5W0V3 765 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 SWSAP1Q6NVH7 229 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 SPATA31D4Q6ZUB0 917 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 ZNF280BQ86YH2 543 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 CMASQ8NFW8 434 aaPredicted RBP16.42■□□□□ 0.22
VPS29-209ENST00000551655 SMG7Q92540 1137 aaKnown RBP16.42■□□□□ 0.22
VPS29-209ENST00000551655 STAMQ92783 540 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 ZNF707Q96C28 371 aaPredicted RBP16.42■□□□□ 0.22
VPS29-209ENST00000551655 DSCC1Q9BVC3 393 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 BCO2Q9BYV7 579 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 ZNF302Q9NR11 478 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 SH2B1Q9NRF2 756 aaPredicted RBP16.42■□□□□ 0.22
VPS29-209ENST00000551655 ZSCAN32Q9NX65 697 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 TAF6LQ9Y6J9 622 aa16.42■□□□□ 0.22
VPS29-209ENST00000551655 DOCK6Q96HP0 2047 aa16.41■□□□□ 0.22
VPS29-209ENST00000551655 CEP295Q9C0D2 2601 aa16.41■□□□□ 0.22
VPS29-209ENST00000551655 KANSL1LA0AUZ9 987 aa16.41■□□□□ 0.22
VPS29-209ENST00000551655 ACAP1Q15027 740 aa16.41■□□□□ 0.22
VPS29-209ENST00000551655 CKAP2LQ8IYA6 745 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms