RNA–Protein interactions for RNA: ENST00000550280.1

SMARCD1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-208ENST00000550280 RIPOR3Q96MK2 946 aa13.06□□□□□ -0.32
SMARCD1-208ENST00000550280 ZBP1Q9H171 429 aa13.06□□□□□ -0.32
SMARCD1-208ENST00000550280 ADAM7Q9H2U9 754 aa13.06□□□□□ -0.32
SMARCD1-208ENST00000550280 PUF60Q9UHX1 559 aaKnown RBP13.06□□□□□ -0.32
SMARCD1-208ENST00000550280 MYH9P35579 1960 aaKnown RBP13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 A0A087WZ62 844 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 CCDC196A0A1B0GTZ2 297 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 EOMESO95936 686 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 ASGR2P07307 311 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 HMGB1P09429 215 aaKnown RBP13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 EPCAMP16422 314 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 RPS6KB1P23443 525 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 TMOD1P28289 359 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 GNA11P29992 359 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 PDIA3P30101 505 aaKnown RBP13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 PHKA2P46019 1235 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 AFF1P51825 1210 aaKnown RBP13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 EVCP57679 992 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 SMC1AQ14683 1233 aaKnown RBP13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 LONRF3Q496Y0 759 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 MTERF2Q49AM1 385 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 LRCH2Q5VUJ6 765 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 KSR1Q8IVT5 923 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 ABI1Q8IZP0 508 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 ETNPPLQ8TBG4 499 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 TBCKQ8TEA7 893 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 CCDC12Q8WUD4 166 aaPredicted RBP13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 SLC22A17Q8WUG5 538 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 CASP10Q92851 521 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 MBOAT7Q96N66 472 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 FDXACB1Q9BRP7 624 aaPredicted RBP13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 TRAIPQ9BWF2 469 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 SLC26A6Q9BXS9 759 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 RNF26Q9BY78 433 aaPredicted RBP13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 NIFKQ9BYG3 293 aaKnown RBP13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 NRDE2Q9H7Z3 1164 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 TSHZ2Q9NRE2 1034 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 NRBP2Q9NSY0 501 aa13.05□□□□□ -0.32
SMARCD1-208ENST00000550280 PLXNA3P51805 1871 aa13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 GAS7O60861 476 aa13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 USP11P51784 963 aa13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 JAK3P52333 1124 aa13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 CCT2P78371 535 aaKnown RBP13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 KRT17Q04695 432 aa13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 TBC1D8BQ0IIM8 1120 aa13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 TOB2Q14106 344 aaPredicted RBP13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 Q4G0T1 1027 aa13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 ANO5Q75V66 913 aa13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 VPS52Q8N1B4 723 aa13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 TMEM105Q8N8V8 129 aa13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 ZNF579Q8NAF0 562 aaKnown RBP13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 NLRP7Q8WX94 980 aa13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 AIFM3Q96NN9 605 aa13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 TEKT3Q9BXF9 490 aa13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 TBC1D13Q9NVG8 400 aa13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 WRAP73Q9P2S5 460 aaPredicted RBP13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 DNAJB4Q9UDY4 337 aa13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 IRAK3Q9Y616 596 aa13.04□□□□□ -0.32
SMARCD1-208ENST00000550280 CYP3A7-CYP3A51PA0A087WV96 503 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 H0Y858 1186 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 EML1O00423 815 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 ZC3H11AO75152 810 aaKnown RBP eCLIP13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 OFD1O75665 1012 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 CXCL14O95715 111 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 GALTP07902 379 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 SRGAP2BP0DMP2 458 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 CYP3A7P24462 503 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 SFNP31947 248 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 SLC11A1P49279 550 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 ITIH3Q06033 890 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 TPRNQ4KMQ1 711 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 XKR3Q5GH77 459 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 RARS2Q5T160 578 aaKnown RBP13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 PLA2G4FQ68DD2 849 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 BLOC1S2Q6QNY1 142 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 ZNF280BQ86YH2 543 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 ZNF710Q8N1W2 664 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 IGSF21Q96ID5 467 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 PRRX2Q99811 253 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 IFT122Q9HBG6 1241 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 SEPT9Q9UHD8 586 aaPredicted RBP13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 TCEAL9Q9UHQ7 104 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 SORCS3Q9UPU3 1222 aa13.03□□□□□ -0.32
SMARCD1-208ENST00000550280 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.02□□□□□ -0.33
SMARCD1-208ENST00000550280 SLC37A4O43826 429 aa13.02□□□□□ -0.33
SMARCD1-208ENST00000550280 MAFO75444 373 aaPredicted RBP13.02□□□□□ -0.33
SMARCD1-208ENST00000550280 CTSAP10619 480 aa13.02□□□□□ -0.33
SMARCD1-208ENST00000550280 FGD1P98174 961 aa13.02□□□□□ -0.33
SMARCD1-208ENST00000550280 KIAA1841Q6NSI8 718 aa13.02□□□□□ -0.33
SMARCD1-208ENST00000550280 AGMOQ6ZNB7 445 aa13.02□□□□□ -0.33
SMARCD1-208ENST00000550280 CENPQQ7L2Z9 268 aaPredicted RBP13.02□□□□□ -0.33
SMARCD1-208ENST00000550280 MIER3Q7Z3K6 550 aa13.02□□□□□ -0.33
SMARCD1-208ENST00000550280 DDX53Q86TM3 631 aaKnown RBP13.02□□□□□ -0.33
SMARCD1-208ENST00000550280 CCDC148Q8NFR7 591 aa13.02□□□□□ -0.33
SMARCD1-208ENST00000550280 RDM1Q8NG50 284 aa13.02□□□□□ -0.33
SMARCD1-208ENST00000550280 BICD2Q8TD16 824 aa13.02□□□□□ -0.33
SMARCD1-208ENST00000550280 SCLT1Q96NL6 688 aa13.02□□□□□ -0.33
SMARCD1-208ENST00000550280 LARP6Q9BRS8 491 aaKnown RBP13.02□□□□□ -0.33
SMARCD1-208ENST00000550280 MRPL9Q9BYD2 267 aaKnown RBP13.02□□□□□ -0.33
SMARCD1-208ENST00000550280 GCOM2Q9BZD3 368 aaPredicted RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms