RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 VCAM1P19320 739 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 LMNB1P20700 586 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 GALCP54803 685 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 TNFAIP1Q13829 316 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 GLYCTKQ8IVS8 523 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 SAMD3Q8N6K7 520 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 LMO3Q8TAP4 145 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 LMBR1Q8WVP7 490 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 JDP2Q8WYK2 163 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 GINM1Q9NU53 330 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 PIM2Q9P1W9 311 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 RGS17Q9UGC6 210 aaPredicted RBP19.6■□□□□ 0.73
VIM-209ENST00000544301 DAAM1Q9Y4D1 1078 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 HEXIM1O94992 359 aaKnown RBP19.59■□□□□ 0.73
VIM-209ENST00000544301 ZBTB48P10074 688 aaPredicted RBP19.59■□□□□ 0.73
VIM-209ENST00000544301 KRT13P13646 458 aa19.59■□□□□ 0.73
VIM-209ENST00000544301 YWHABP31946 246 aaKnown RBP19.59■□□□□ 0.73
VIM-209ENST00000544301 HNRNPH2P55795 449 aaKnown RBP19.59■□□□□ 0.73
VIM-209ENST00000544301 DLG4P78352 724 aa19.59■□□□□ 0.73
VIM-209ENST00000544301 UGCGQ16739 394 aa19.59■□□□□ 0.73
VIM-209ENST00000544301 PHLDB3Q6NSJ2 640 aa19.59■□□□□ 0.73
VIM-209ENST00000544301 POTEAQ6S8J7 498 aa19.59■□□□□ 0.73
VIM-209ENST00000544301 STXBP5LQ9Y2K9 1186 aa19.59■□□□□ 0.73
VIM-209ENST00000544301 ASTN2O75129 1339 aaPredicted RBP19.58■□□□□ 0.73
VIM-209ENST00000544301 NPEPPSP55786 919 aa19.58■□□□□ 0.73
VIM-209ENST00000544301 MTMR2Q13614 643 aa19.58■□□□□ 0.73
VIM-209ENST00000544301 INTS8Q75QN2 995 aaKnown RBP19.58■□□□□ 0.73
VIM-209ENST00000544301 FMNL3Q8IVF7 1028 aa19.58■□□□□ 0.73
VIM-209ENST00000544301 C12orf56Q8IXR9 622 aa19.58■□□□□ 0.73
VIM-209ENST00000544301 SH2D3AQ9BRG2 576 aa19.58■□□□□ 0.73
VIM-209ENST00000544301 EPB41L5Q9HCM4 733 aa19.58■□□□□ 0.73
VIM-209ENST00000544301 TMEM150BA6NC51 233 aa19.58■□□□□ 0.72
VIM-209ENST00000544301 MYCLP12524 364 aaPredicted RBP19.58■□□□□ 0.72
VIM-209ENST00000544301 CARSP49589 748 aaKnown RBP19.58■□□□□ 0.72
VIM-209ENST00000544301 GUCY2DQ02846 1103 aa19.58■□□□□ 0.72
VIM-209ENST00000544301 PTPROQ16827 1216 aa19.58■□□□□ 0.72
VIM-209ENST00000544301 ACTRT1Q8TDG2 376 aa19.58■□□□□ 0.72
VIM-209ENST00000544301 SLC16A10Q8TF71 515 aa19.58■□□□□ 0.72
VIM-209ENST00000544301 CBWD1Q9BRT8 395 aa19.58■□□□□ 0.72
VIM-209ENST00000544301 TAOK3Q9H2K8 898 aa19.58■□□□□ 0.72
VIM-209ENST00000544301 RPAP3Q9H6T3 665 aaPredicted RBP19.58■□□□□ 0.72
VIM-209ENST00000544301 CALCOCO1Q9P1Z2 691 aa19.58■□□□□ 0.72
VIM-209ENST00000544301 EMSYQ7Z589 1322 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 ZSCAN5CA6NGD5 496 aaPredicted RBP19.57■□□□□ 0.72
VIM-209ENST00000544301 BACH1O14867 736 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 CEP104O60308 925 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 ATP9AO75110 1047 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 ZBED4O75132 1171 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 CCDC172P0C7W6 258 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 VAMP7P51809 220 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 TNNC1P63316 161 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 NNTQ13423 1086 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 ARHGAP44Q17R89 818 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 TAF3Q5VWG9 929 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 PEX26Q7Z412 305 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 C4orf19Q8IY42 314 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 TSEN2Q8NCE0 465 aaKnown RBP19.57■□□□□ 0.72
VIM-209ENST00000544301 AFAP1L1Q8TED9 768 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 TRERF1Q96PN7 1200 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 RMDN3Q96TC7 470 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 PDCD2LQ9BRP1 358 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 ST6GALNAC4Q9H4F1 302 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 PXMP2Q9NR77 195 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 SUCLA2Q9P2R7 463 aaPredicted RBP19.57■□□□□ 0.72
VIM-209ENST00000544301 CTDP1Q9Y5B0 961 aaPredicted RBP19.57■□□□□ 0.72
VIM-209ENST00000544301 NCANO14594 1321 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 CAPN2P17655 700 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 RFX1P22670 979 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 GTF2BQ00403 316 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.57■□□□□ 0.72
VIM-209ENST00000544301 HAUS6Q7Z4H7 955 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 SYCE1Q8N0S2 351 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 METTL13Q8N6R0 699 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 SCFD2Q8WU76 684 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 CCDC43Q96MW1 224 aaKnown RBP19.57■□□□□ 0.72
VIM-209ENST00000544301 TIPINQ9BVW5 301 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 PLEKHA4Q9H4M7 779 aa19.57■□□□□ 0.72
VIM-209ENST00000544301 ESYT3A0FGR9 886 aa19.56■□□□□ 0.72
VIM-209ENST00000544301 TMCO5BA8MYB1 307 aa19.56■□□□□ 0.72
VIM-209ENST00000544301 FOXN3O00409 490 aaPredicted RBP19.56■□□□□ 0.72
VIM-209ENST00000544301 CCNE2O96020 404 aa19.56■□□□□ 0.72
VIM-209ENST00000544301 TMEM253P0C7T8 217 aa19.56■□□□□ 0.72
VIM-209ENST00000544301 ACTN2P35609 894 aa19.56■□□□□ 0.72
VIM-209ENST00000544301 PSMC5P62195 406 aa19.56■□□□□ 0.72
VIM-209ENST00000544301 PPP3CAQ08209 521 aa19.56■□□□□ 0.72
VIM-209ENST00000544301 KIF22Q14807 665 aa19.56■□□□□ 0.72
VIM-209ENST00000544301 RNF207Q6ZRF8 634 aa19.56■□□□□ 0.72
VIM-209ENST00000544301 DEFB132Q7Z7B7 95 aa19.56■□□□□ 0.72
VIM-209ENST00000544301 DAAM2Q86T65 1068 aa19.56■□□□□ 0.72
VIM-209ENST00000544301 NT5DC3Q86UY8 548 aa19.56■□□□□ 0.72
VIM-209ENST00000544301 XXYLT1Q8NBI6 393 aa19.56■□□□□ 0.72
VIM-209ENST00000544301 GPRC5CQ9NQ84 441 aa19.56■□□□□ 0.72
VIM-209ENST00000544301 HSPBP1Q9NZL4 362 aa19.56■□□□□ 0.72
VIM-209ENST00000544301 NFU1Q9UMS0 254 aa19.56■□□□□ 0.72
VIM-209ENST00000544301 RAD51CO43502 376 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 JAK3P52333 1124 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 PAK2Q13177 524 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 ZSCAN26Q16670 478 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 C1orf220Q5T0J3 134 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 ARHGEF16Q5VV41 709 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms