RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 TRIP12Q14669 1992 aaPredicted RBP18.94■□□□□ 0.62
LIG1-204ENST00000542460 GTPBP6O43824 516 aaPredicted RBP18.94■□□□□ 0.62
LIG1-204ENST00000542460 PARNO95453 639 aaKnown RBP18.94■□□□□ 0.62
LIG1-204ENST00000542460 IQCF3P0C7M6 154 aa18.94■□□□□ 0.62
LIG1-204ENST00000542460 PLS3P13797 630 aa18.94■□□□□ 0.62
LIG1-204ENST00000542460 ZNF131P52739 623 aa18.94■□□□□ 0.62
LIG1-204ENST00000542460 CRYBB1P53674 252 aaPredicted RBP18.94■□□□□ 0.62
LIG1-204ENST00000542460 CUL4BQ13620 913 aa18.94■□□□□ 0.62
LIG1-204ENST00000542460 TRAF7Q6Q0C0 670 aa18.94■□□□□ 0.62
LIG1-204ENST00000542460 RNF149Q8NC42 400 aa18.94■□□□□ 0.62
LIG1-204ENST00000542460 NLRP4Q96MN2 994 aa18.94■□□□□ 0.62
LIG1-204ENST00000542460 SCLT1Q96NL6 688 aa18.94■□□□□ 0.62
LIG1-204ENST00000542460 PPP1R16BQ96T49 567 aa18.94■□□□□ 0.62
LIG1-204ENST00000542460 BLZF1Q9H2G9 400 aa18.94■□□□□ 0.62
LIG1-204ENST00000542460 ZHX3Q9H4I2 956 aa18.94■□□□□ 0.62
LIG1-204ENST00000542460 PARVGQ9HBI0 331 aa18.94■□□□□ 0.62
LIG1-204ENST00000542460 A0A087WZ62 844 aa18.93■□□□□ 0.62
LIG1-204ENST00000542460 MBD3O95983 291 aa18.93■□□□□ 0.62
LIG1-204ENST00000542460 IDEP14735 1019 aa18.93■□□□□ 0.62
LIG1-204ENST00000542460 PTMSP20962 102 aa18.93■□□□□ 0.62
LIG1-204ENST00000542460 ITGB8P26012 769 aa18.93■□□□□ 0.62
LIG1-204ENST00000542460 NAMPTP43490 491 aa18.93■□□□□ 0.62
LIG1-204ENST00000542460 CCL23P55773 120 aa18.93■□□□□ 0.62
LIG1-204ENST00000542460 ASIC1P78348 528 aa18.93■□□□□ 0.62
LIG1-204ENST00000542460 MDM2Q00987 491 aaPredicted RBP18.93■□□□□ 0.62
LIG1-204ENST00000542460 DMP1Q13316 513 aaPredicted RBP18.93■□□□□ 0.62
LIG1-204ENST00000542460 CAPSQ13938 189 aa18.93■□□□□ 0.62
LIG1-204ENST00000542460 POSTNQ15063 836 aa18.93■□□□□ 0.62
LIG1-204ENST00000542460 CCDC65Q8IXS2 484 aa18.93■□□□□ 0.62
LIG1-204ENST00000542460 MYCT1Q8N699 235 aa18.93■□□□□ 0.62
LIG1-204ENST00000542460 BSNDQ8WZ55 320 aa18.93■□□□□ 0.62
LIG1-204ENST00000542460 ZNF668Q96K58 619 aaPredicted RBP18.93■□□□□ 0.62
LIG1-204ENST00000542460 FDXACB1Q9BRP7 624 aaPredicted RBP18.93■□□□□ 0.62
LIG1-204ENST00000542460 GCOM2Q9BZD3 368 aaPredicted RBP18.93■□□□□ 0.62
LIG1-204ENST00000542460 WNT8AQ9H1J5 351 aa18.93■□□□□ 0.62
LIG1-204ENST00000542460 CDHR5Q9HBB8 845 aa18.93■□□□□ 0.62
LIG1-204ENST00000542460 PVALEFA0A1B0GWK0 134 aa18.92■□□□□ 0.62
LIG1-204ENST00000542460 FRMD3A2A2Y4 597 aa18.92■□□□□ 0.62
LIG1-204ENST00000542460 SLC34A2O95436 690 aa18.92■□□□□ 0.62
LIG1-204ENST00000542460 GAP43P17677 238 aa18.92■□□□□ 0.62
LIG1-204ENST00000542460 CASP1P29466 404 aa18.92■□□□□ 0.62
LIG1-204ENST00000542460 NPTX2P47972 431 aa18.92■□□□□ 0.62
LIG1-204ENST00000542460 SMTNP53814 917 aa18.92■□□□□ 0.62
LIG1-204ENST00000542460 PEX3P56589 373 aa18.92■□□□□ 0.62
LIG1-204ENST00000542460 ODR4Q5SWX8 454 aa18.92■□□□□ 0.62
LIG1-204ENST00000542460 MFSD5Q6N075 450 aa18.92■□□□□ 0.62
LIG1-204ENST00000542460 GPT2Q8TD30 523 aa18.92■□□□□ 0.62
LIG1-204ENST00000542460 SPIRE2Q8WWL2 714 aa18.92■□□□□ 0.62
LIG1-204ENST00000542460 OSMRQ99650 979 aa18.92■□□□□ 0.62
LIG1-204ENST00000542460 NTPCRQ9BSD7 190 aaKnown RBP18.92■□□□□ 0.62
LIG1-204ENST00000542460 NFKBIZQ9BYH8 718 aa18.92■□□□□ 0.62
LIG1-204ENST00000542460 INO80BQ9C086 356 aaPredicted RBP18.92■□□□□ 0.62
LIG1-204ENST00000542460 IFT122Q9HBG6 1241 aa18.92■□□□□ 0.62
LIG1-204ENST00000542460 PANK4Q9NVE7 773 aa18.92■□□□□ 0.62
LIG1-204ENST00000542460 SEL1LQ9UBV2 794 aa18.92■□□□□ 0.62
LIG1-204ENST00000542460 SQORQ9Y6N5 450 aa18.92■□□□□ 0.62
LIG1-204ENST00000542460 LRRIQ4A6NIV6 560 aa18.91■□□□□ 0.62
LIG1-204ENST00000542460 CCDC169A6NNP5 214 aa18.91■□□□□ 0.62
LIG1-204ENST00000542460 EIF4BP23588 611 aaKnown RBP18.91■□□□□ 0.62
LIG1-204ENST00000542460 PHKA2P46019 1235 aa18.91■□□□□ 0.62
LIG1-204ENST00000542460 PTENP60484 403 aa18.91■□□□□ 0.62
LIG1-204ENST00000542460 DPYDQ12882 1025 aa18.91■□□□□ 0.62
LIG1-204ENST00000542460 UNC13DQ70J99 1090 aa18.91■□□□□ 0.62
LIG1-204ENST00000542460 TMEM199Q8N511 208 aa18.91■□□□□ 0.62
LIG1-204ENST00000542460 USP38Q8NB14 1042 aa18.91■□□□□ 0.62
LIG1-204ENST00000542460 DEPTORQ8TB45 409 aa18.91■□□□□ 0.62
LIG1-204ENST00000542460 SCLYQ96I15 445 aa18.91■□□□□ 0.62
LIG1-204ENST00000542460 ALPK3Q96L96 1907 aa18.91■□□□□ 0.62
LIG1-204ENST00000542460 H0YGN5 161 aa18.9■□□□□ 0.62
LIG1-204ENST00000542460 TRAK2O60296 914 aa18.9■□□□□ 0.62
LIG1-204ENST00000542460 PRR29P0C7W0 189 aa18.9■□□□□ 0.62
LIG1-204ENST00000542460 DARSP14868 501 aaKnown RBP18.9■□□□□ 0.62
LIG1-204ENST00000542460 SYN1P17600 705 aa18.9■□□□□ 0.62
LIG1-204ENST00000542460 RFC2P35250 354 aa18.9■□□□□ 0.62
LIG1-204ENST00000542460 MBTPS1Q14703 1052 aa18.9■□□□□ 0.62
LIG1-204ENST00000542460 HERC4Q5GLZ8 1057 aaPredicted RBP18.9■□□□□ 0.62
LIG1-204ENST00000542460 FBXO47Q5MNV8 452 aa18.9■□□□□ 0.62
LIG1-204ENST00000542460 SRGAP1Q7Z6B7 1085 aa18.9■□□□□ 0.62
LIG1-204ENST00000542460 IFNLR1Q8IU57 520 aaPredicted RBP18.9■□□□□ 0.62
LIG1-204ENST00000542460 EVPLQ92817 2033 aa18.9■□□□□ 0.62
LIG1-204ENST00000542460 C2orf40Q9H1Z8 148 aa18.9■□□□□ 0.62
LIG1-204ENST00000542460 KMT5AQ9NQR1 393 aa18.9■□□□□ 0.62
LIG1-204ENST00000542460 ZMYND8Q9ULU4 1186 aaPredicted RBP18.9■□□□□ 0.62
LIG1-204ENST00000542460 EFNA5P52803 228 aa18.9■□□□□ 0.62
LIG1-204ENST00000542460 PNOCQ13519 176 aa18.9■□□□□ 0.62
LIG1-204ENST00000542460 CDCA2Q69YH5 1023 aaPredicted RBP18.9■□□□□ 0.62
LIG1-204ENST00000542460 ZBTB8OSQ8IWT0 167 aa18.9■□□□□ 0.62
LIG1-204ENST00000542460 SLC17A8Q8NDX2 589 aa18.9■□□□□ 0.62
LIG1-204ENST00000542460 TMEM40Q8WWA1 233 aa18.9■□□□□ 0.62
LIG1-204ENST00000542460 OLFML3Q9NRN5 406 aa18.9■□□□□ 0.62
LIG1-204ENST00000542460 H0YCG3 227 aa18.89■□□□□ 0.61
LIG1-204ENST00000542460 NBNO60934 754 aa18.89■□□□□ 0.61
LIG1-204ENST00000542460 RPS6KA5O75582 802 aa18.89■□□□□ 0.61
LIG1-204ENST00000542460 SMC2O95347 1197 aa18.89■□□□□ 0.61
LIG1-204ENST00000542460 RPN1P04843 607 aaKnown RBP18.89■□□□□ 0.61
LIG1-204ENST00000542460 MAPTP10636 758 aaKnown RBP18.89■□□□□ 0.61
LIG1-204ENST00000542460 GHRP10912 638 aa18.89■□□□□ 0.61
LIG1-204ENST00000542460 SCP2P22307 547 aa18.89■□□□□ 0.61
LIG1-204ENST00000542460 COASYQ13057 564 aa18.89■□□□□ 0.61
LIG1-204ENST00000542460 LPIN1Q14693 890 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms