RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 FXR1P51114 621 aaKnown RBP eCLIP8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 SEC24CP53992 1094 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 HDAC4P56524 1084 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 SPIRE1Q08AE8 756 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 HYIQ5T013 277 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 NAP1L4Q99733 375 aaKnown RBP8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 CORO1BQ9BR76 489 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 RMND1Q9NWS8 449 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 CNOT7Q9UIV1 285 aaKnown RBP8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 RWDD2AQ9UIY3 292 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 CTNND2Q9UQB3 1225 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 PARP14Q460N5 1801 aa8.67□□□□□ -1.02
PDLIM5-221ENST00000542407 UTRNP46939 3433 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 GOLGA8KD6RF30 607 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 ZNF185O15231 689 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 TRIM21P19474 475 aaKnown RBP8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 PRCPP42785 496 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 SMTNP53814 917 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 ARHGAP4P98171 946 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 TNFAIP1Q13829 316 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 Q4G0T1 1027 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 LRRC23Q53EV4 343 aaPredicted RBP8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 FAM117BQ6P1L5 589 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 SEPT14Q6ZU15 432 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 KCNK18Q7Z418 384 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 ADSSL1Q8N142 457 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 GIMAP8Q8ND71 665 aaPredicted RBP8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 DDX12PQ92771 950 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 HPS3Q969F9 1004 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 TBC1D31Q96DN5 1066 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 DDX27Q96GQ7 796 aaKnown RBP8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 BRD8Q9H0E9 1235 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 MUC3BQ9H195 1237 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 RPAP3Q9H6T3 665 aaPredicted RBP8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 SSC5DA1L4H1 1573 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 A0A1B0GTH6 734 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 GOLGA6L7A0A1B0GV03 622 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 CYP3A4P08684 503 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 MSL3P1P0C860 447 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 CIITAP33076 1130 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 AMPD2Q01433 879 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 IKQ13123 557 aaPredicted RBP8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 ZYXQ15942 572 aaKnown RBP8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 TMEM266Q2M3C6 531 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 NAA35Q5VZE5 725 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 CNNM4Q6P4Q7 775 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 PLPP6Q8IY26 295 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 ANKK1Q8NFD2 765 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 SPIRE2Q8WWL2 714 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 SPDL1Q96EA4 605 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 PAGR1Q9BTK6 254 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 FBXO28Q9NVF7 368 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 STK17AQ9UEE5 414 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 PHIPQ8WWQ0 1821 aa8.66□□□□□ -1.02
PDLIM5-221ENST00000542407 PAPPA2Q9BXP8 1791 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 FAM86B1E9PN63 330 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 HSF2BPO75031 334 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 FOSP01100 380 aaPredicted RBP8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 FAM86B2P0C5J1 330 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 PBX1P40424 430 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 ERVK-24P63145 666 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 APBA1Q02410 837 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 MAP2K5Q13163 448 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 CLPPQ16740 277 aaPredicted RBP8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 THEMIS2Q5TEJ8 643 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 CCDC121Q6ZUS5 278 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 FAM160B2Q86V87 743 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 LMNTD2Q8IXW0 634 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 RASSF8Q8NHQ8 419 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 ERMNQ8TAM6 284 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 RAD54LQ92698 747 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 SENP7Q9BQF6 1050 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 OSBPL10Q9BXB5 764 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 ZNF341Q9BYN7 854 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 DEFB129Q9H1M3 183 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 SH2D4AQ9H788 454 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 EMILIN3Q9NT22 766 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 HAUS2Q9NVX0 235 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 ZMAT5Q9UDW3 170 aaKnown RBP8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 FEM1BQ9UK73 627 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 WDR37Q9Y2I8 494 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 SBF1O95248 1867 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 ZNF536O15090 1300 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 MYMKA6NI61 221 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 CTNND1O60716 968 aaKnown RBP8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 KRT14P02533 472 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 HOXA13P31271 388 aaPredicted RBP8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 PMS1P54277 932 aaKnown RBP8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 EHHADHQ08426 723 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 EIF2B5Q13144 721 aaKnown RBP8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 PAK1Q13153 545 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 RCN1Q15293 331 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 COBLL1Q53SF7 1204 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 TTMPQ5BVD1 217 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 WLSQ5T9L3 541 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 CNGA4Q8IV77 575 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 MFN1Q8IWA4 741 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 EFCAB3Q8N7B9 438 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 ZNF473Q8WTR7 871 aaKnown RBP8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms