RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	FAM83G	A6ND36	823 aa		5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	CDC45	O75419	566 aa		5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	PRPF6	O94906	941 aa	Known RBP	5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	C1S	P09871	688 aa		5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	ADCY7	P51828	1080 aa		5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	FOXE3	Q13461	319 aa		5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	TCIRG1	Q13488	830 aa		5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	EPHA7	Q15375	998 aa		5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	KRT40	Q6A162	431 aa		5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	IGFL4	Q6B9Z1	124 aa		5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	C16orf86	Q6ZW13	317 aa		5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	GAREM2	Q75VX8	874 aa		5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	PHYKPL	Q8IUZ5	450 aa		5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	NIM1K	Q8IY84	436 aa		5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	PLEKHG4B	Q96PX9	1271 aa		5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	GPHA2	Q96T91	129 aa		5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	TARS2	Q9BW92	718 aa	Known RBP	5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	MTFR1L	Q9H019	292 aa		5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	MTG2	Q9H4K7	406 aa		5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	KCMF1	Q9P0J7	381 aa		5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	VWA7	Q9Y334	891 aa		5.71	□□□□□ -1.5
PRKDC-210	ENST00000541488	PCDH8	O95206	1070 aa		5.7	□□□□□ -1.5
PRKDC-210	ENST00000541488	F2	P00734	622 aa		5.7	□□□□□ -1.5
PRKDC-210	ENST00000541488	ATXN1	P54253	815 aa	Known RBP	5.7	□□□□□ -1.5
PRKDC-210	ENST00000541488	HHEX	Q03014	270 aa		5.7	□□□□□ -1.5
PRKDC-210	ENST00000541488	CRHR2	Q13324	411 aa		5.7	□□□□□ -1.5
PRKDC-210	ENST00000541488	SPTY2D1	Q68D10	685 aa	Predicted RBP	5.7	□□□□□ -1.5
PRKDC-210	ENST00000541488	IL17D	Q8TAD2	202 aa		5.7	□□□□□ -1.5
PRKDC-210	ENST00000541488	RABGGTA	Q92696	567 aa		5.7	□□□□□ -1.5
PRKDC-210	ENST00000541488	NINJ1	Q92982	152 aa		5.7	□□□□□ -1.5
PRKDC-210	ENST00000541488	NKD2	Q969F2	451 aa	Predicted RBP	5.7	□□□□□ -1.5
PRKDC-210	ENST00000541488	GFM2	Q969S9	779 aa	Known RBP	5.7	□□□□□ -1.5
PRKDC-210	ENST00000541488	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	5.7	□□□□□ -1.5
PRKDC-210	ENST00000541488	WDR92	Q96MX6	357 aa		5.7	□□□□□ -1.5
PRKDC-210	ENST00000541488	SLC6A15	Q9H2J7	730 aa		5.7	□□□□□ -1.5
PRKDC-210	ENST00000541488	NELFA	Q9H3P2	528 aa		5.7	□□□□□ -1.5
PRKDC-210	ENST00000541488	ZMAT4	Q9H898	229 aa		5.7	□□□□□ -1.5
PRKDC-210	ENST00000541488	INTS7	Q9NVH2	962 aa	Known RBP	5.7	□□□□□ -1.5
PRKDC-210	ENST00000541488	SH3BP1	Q9Y3L3	701 aa		5.7	□□□□□ -1.5
PRKDC-210	ENST00000541488	UBE2QL1	A1L167	161 aa		5.69	□□□□□ -1.5
PRKDC-210	ENST00000541488	TOX4	O94842	621 aa		5.69	□□□□□ -1.5
PRKDC-210	ENST00000541488	DSG1	Q02413	1049 aa		5.69	□□□□□ -1.5
PRKDC-210	ENST00000541488	SART3	Q15020	963 aa	Known RBP	5.69	□□□□□ -1.5
PRKDC-210	ENST00000541488	SEPT7	Q16181	437 aa	Known RBP	5.69	□□□□□ -1.5
PRKDC-210	ENST00000541488	TIGD7	Q6NT04	549 aa	Predicted RBP	5.69	□□□□□ -1.5
PRKDC-210	ENST00000541488	NME9	Q86XW9	330 aa		5.69	□□□□□ -1.5
PRKDC-210	ENST00000541488	PLA2G15	Q8NCC3	412 aa		5.69	□□□□□ -1.5
PRKDC-210	ENST00000541488	CEP89	Q96ST8	783 aa		5.69	□□□□□ -1.5
PRKDC-210	ENST00000541488	NOL10	Q9BSC4	688 aa	Known RBP	5.69	□□□□□ -1.5
PRKDC-210	ENST00000541488	IKZF4	Q9H2S9	585 aa		5.69	□□□□□ -1.5
PRKDC-210	ENST00000541488	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	5.69	□□□□□ -1.5
PRKDC-210	ENST00000541488	RCAN3	Q9UKA8	241 aa		5.69	□□□□□ -1.5
PRKDC-210	ENST00000541488	ELL2	O00472	640 aa	Predicted RBP	5.68	□□□□□ -1.5
PRKDC-210	ENST00000541488	MAF	O75444	373 aa	Predicted RBP	5.68	□□□□□ -1.5
PRKDC-210	ENST00000541488	LMO1	P25800	156 aa		5.68	□□□□□ -1.5
PRKDC-210	ENST00000541488	ACRV1	P26436	265 aa		5.68	□□□□□ -1.5
PRKDC-210	ENST00000541488	KPNA1	P52294	538 aa	Predicted RBP	5.68	□□□□□ -1.5
PRKDC-210	ENST00000541488	BCAR1	P56945	870 aa		5.68	□□□□□ -1.5
PRKDC-210	ENST00000541488	SESN2	P58004	480 aa	Predicted RBP	5.68	□□□□□ -1.5
PRKDC-210	ENST00000541488	IL2	P60568	153 aa		5.68	□□□□□ -1.5
PRKDC-210	ENST00000541488	PTH1R	Q03431	593 aa		5.68	□□□□□ -1.5
PRKDC-210	ENST00000541488	ADCY1	Q08828	1119 aa		5.68	□□□□□ -1.5
PRKDC-210	ENST00000541488	LSM12	Q3MHD2	195 aa	Known RBP	5.68	□□□□□ -1.5
PRKDC-210	ENST00000541488	KIAA1841	Q6NSI8	718 aa		5.68	□□□□□ -1.5
PRKDC-210	ENST00000541488	SYNPO	Q8N3V7	929 aa		5.68	□□□□□ -1.5
PRKDC-210	ENST00000541488	PGBD4	Q96DM1	585 aa		5.68	□□□□□ -1.5
PRKDC-210	ENST00000541488	ZNF503	Q96F45	646 aa		5.68	□□□□□ -1.5
PRKDC-210	ENST00000541488	SPTLC3	Q9NUV7	552 aa		5.68	□□□□□ -1.5
PRKDC-210	ENST00000541488	MSRA	Q9UJ68	235 aa		5.68	□□□□□ -1.5
PRKDC-210	ENST00000541488	USP18	Q9UMW8	372 aa		5.68	□□□□□ -1.5
PRKDC-210	ENST00000541488	DAPK3	O43293	454 aa		5.67	□□□□□ -1.5
PRKDC-210	ENST00000541488	TGM5	O43548	720 aa		5.67	□□□□□ -1.5
PRKDC-210	ENST00000541488	OPHN1	O60890	802 aa		5.67	□□□□□ -1.5
PRKDC-210	ENST00000541488	ADAM8	P78325	824 aa		5.67	□□□□□ -1.5
PRKDC-210	ENST00000541488	DALRD3	Q5D0E6	543 aa	Known RBP	5.67	□□□□□ -1.5
PRKDC-210	ENST00000541488	ZBTB41	Q5SVQ8	909 aa		5.67	□□□□□ -1.5
PRKDC-210	ENST00000541488		Q6ZRM9	215 aa		5.67	□□□□□ -1.5
PRKDC-210	ENST00000541488	BMP8A	Q7Z5Y6	402 aa		5.67	□□□□□ -1.5
PRKDC-210	ENST00000541488	ADGRE4P	Q86SQ3	457 aa		5.67	□□□□□ -1.5
PRKDC-210	ENST00000541488	CLEC14A	Q86T13	490 aa		5.67	□□□□□ -1.5
PRKDC-210	ENST00000541488	PASD1	Q8IV76	773 aa		5.67	□□□□□ -1.5
PRKDC-210	ENST00000541488	MB21D1	Q8N884	522 aa		5.67	□□□□□ -1.5
PRKDC-210	ENST00000541488	LEO1	Q8WVC0	666 aa	Predicted RBP	5.67	□□□□□ -1.5
PRKDC-210	ENST00000541488	FERMT2	Q96AC1	680 aa		5.67	□□□□□ -1.5
PRKDC-210	ENST00000541488	IL23A	Q9NPF7	189 aa		5.67	□□□□□ -1.5
PRKDC-210	ENST00000541488	SYNPO2	Q9UMS6	1093 aa		5.67	□□□□□ -1.5
PRKDC-210	ENST00000541488	GIT1	Q9Y2X7	761 aa		5.67	□□□□□ -1.5
PRKDC-210	ENST00000541488		A0A0A6YYK5	440 aa	Predicted RBP	5.66	□□□□□ -1.5
PRKDC-210	ENST00000541488	ZNF202	O95125	648 aa		5.66	□□□□□ -1.5
PRKDC-210	ENST00000541488	CD40	P25942	277 aa		5.66	□□□□□ -1.5
PRKDC-210	ENST00000541488	SCNN1B	P51168	640 aa		5.66	□□□□□ -1.5
PRKDC-210	ENST00000541488	SMAD3	P84022	425 aa	Known RBP	5.66	□□□□□ -1.5
PRKDC-210	ENST00000541488	ELAVL1	Q15717	326 aa	Known RBP	5.66	□□□□□ -1.5
PRKDC-210	ENST00000541488	MIIP	Q5JXC2	388 aa		5.66	□□□□□ -1.5
PRKDC-210	ENST00000541488	FAM111B	Q6SJ93	734 aa		5.66	□□□□□ -1.5
PRKDC-210	ENST00000541488	KANSL1	Q7Z3B3	1105 aa		5.66	□□□□□ -1.5
PRKDC-210	ENST00000541488	ELOA2	Q8IYF1	753 aa	Predicted RBP	5.66	□□□□□ -1.5
PRKDC-210	ENST00000541488	ZZZ3	Q8IYH5	903 aa		5.66	□□□□□ -1.5
PRKDC-210	ENST00000541488	EFHB	Q8N7U6	833 aa		5.66	□□□□□ -1.5
PRKDC-210	ENST00000541488	LPP	Q93052	612 aa		5.66	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms