RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 AGTPBP1Q9UPW5 1226 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 ZNFX1Q9P2E3 1918 aaKnown RBP15.86■□□□□ 0.13
CLIP1-216ENST00000541410 CENPFP49454 3210 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 A0A0G2JMZ2 1700 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 A0A087X0T9 212 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 DENND3A2RUS2 1198 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 GLTPD2A6NH11 291 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 BUB1O43683 1085 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 SERPING1P05155 500 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 FAM228BP0C875 321 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 UBA1P22314 1058 aaKnown RBP15.86■□□□□ 0.13
CLIP1-216ENST00000541410 GTF2BQ00403 316 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 DMP1Q13316 513 aaPredicted RBP15.86■□□□□ 0.13
CLIP1-216ENST00000541410 MOGSQ13724 837 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 MIS18BP1Q6P0N0 1132 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 KMT5AQ9NQR1 393 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 CYP26B1Q9NR63 512 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 HSPBP1Q9NZL4 362 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 CDC23Q9UJX2 597 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 NFASCO94856 1347 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 SUPT20HL2P0C7V6 817 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 PTK2Q05397 1052 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 BFSP1Q12934 665 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 IQCEQ6IPM2 695 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 TMEM161BQ8NDZ6 487 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 RDM1Q8NG50 284 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 TMEM143Q96AN5 459 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 ELMO3Q96BJ8 720 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 FAM84AQ96KN4 292 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 PACSIN1Q9BY11 444 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 TMEM206Q9H813 350 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 SYNGAP1Q96PV0 1343 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 CXCL11O14625 94 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 ECM2O94769 699 aaPredicted RBP15.85■□□□□ 0.13
CLIP1-216ENST00000541410 GCLMP48507 274 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 NCKAP1LP55160 1127 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 TMEM63BQ5T3F8 832 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 PLEKHO2Q8TD55 490 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 SECISBP2LQ93073 1101 aaKnown RBP15.85■□□□□ 0.13
CLIP1-216ENST00000541410 CAPZA3Q96KX2 299 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 PLCB1Q9NQ66 1216 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 ZNF302Q9NR11 478 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 MYO1AQ9UBC5 1043 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 FBXO40Q9UH90 709 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 TBX20Q9UMR3 447 aa15.85■□□□□ 0.13
CLIP1-216ENST00000541410 EMSYQ7Z589 1322 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 GFPT2O94808 682 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 ADSSP30520 456 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 PPP3CAQ08209 521 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 PPIL2Q13356 520 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 MAPK8IP2Q13387 824 aaPredicted RBP15.84■□□□□ 0.13
CLIP1-216ENST00000541410 NFIL3Q16649 462 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 ARMC9Q7Z3E5 817 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 ZNF571Q7Z3V5 609 aaPredicted RBP15.84■□□□□ 0.13
CLIP1-216ENST00000541410 IRF2BP2Q7Z5L9 587 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 CBWD2Q8IUF1 395 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 PSMB7Q99436 277 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 MKNK1Q9BUB5 465 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 AIPL1Q9NZN9 384 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 MYO6Q9UM54 1294 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 KCNH4Q9UQ05 1017 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 SSU72P8A0A1W2PR75 194 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 EFCAB8A8MWE9 144 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 ZNF185O15231 689 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 STAM2O75886 525 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 ARIH2O95376 493 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 LCA5LO95447 670 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 ADRB2P07550 413 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 SMTNP53814 917 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 NAP1L1P55209 391 aaKnown RBP15.84■□□□□ 0.13
CLIP1-216ENST00000541410 MYL7Q01449 175 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 GPAT2Q6NUI2 795 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 GOLGA5Q8TBA6 731 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 ZC3H15Q8WU90 426 aaKnown RBP15.84■□□□□ 0.13
CLIP1-216ENST00000541410 CCDC127Q96BQ5 260 aa15.84■□□□□ 0.13
CLIP1-216ENST00000541410 POP1Q99575 1024 aaKnown RBP15.84■□□□□ 0.13
CLIP1-216ENST00000541410 POLR3FQ9H1D9 316 aaPredicted RBP15.84■□□□□ 0.13
CLIP1-216ENST00000541410 FARP2O94887 1054 aaPredicted RBP15.83■□□□□ 0.12
CLIP1-216ENST00000541410 MARK3P27448 753 aa15.83■□□□□ 0.12
CLIP1-216ENST00000541410 CNGA1P29973 690 aa15.83■□□□□ 0.12
CLIP1-216ENST00000541410 AMPD2Q01433 879 aa15.83■□□□□ 0.12
CLIP1-216ENST00000541410 ARHGAP44Q17R89 818 aa15.83■□□□□ 0.12
CLIP1-216ENST00000541410 XXYLT1Q8NBI6 393 aa15.83■□□□□ 0.12
CLIP1-216ENST00000541410 SYN2Q92777 582 aaPredicted RBP15.83■□□□□ 0.12
CLIP1-216ENST00000541410 NUCKS1Q9H1E3 243 aaKnown RBP15.83■□□□□ 0.12
CLIP1-216ENST00000541410 PORCNQ9H237 461 aa15.83■□□□□ 0.12
CLIP1-216ENST00000541410 GSTTP1A0A1W2PQM5 241 aa15.83■□□□□ 0.12
CLIP1-216ENST00000541410 GGPS1O95749 300 aa15.83■□□□□ 0.12
CLIP1-216ENST00000541410 MAPTP10636 758 aaKnown RBP15.83■□□□□ 0.12
CLIP1-216ENST00000541410 KRT13P13646 458 aa15.83■□□□□ 0.12
CLIP1-216ENST00000541410 VAMP7P51809 220 aa15.83■□□□□ 0.12
CLIP1-216ENST00000541410 POLGP54098 1239 aaPredicted RBP15.83■□□□□ 0.12
CLIP1-216ENST00000541410 CHMP4BP1P59074 171 aa15.83■□□□□ 0.12
CLIP1-216ENST00000541410 TRIM50Q86XT4 487 aa15.83■□□□□ 0.12
CLIP1-216ENST00000541410 SLC9A9Q8IVB4 645 aa15.83■□□□□ 0.12
CLIP1-216ENST00000541410 FBXO16Q8IX29 292 aaPredicted RBP15.83■□□□□ 0.12
CLIP1-216ENST00000541410 SLC10A4Q96EP9 437 aa15.83■□□□□ 0.12
CLIP1-216ENST00000541410 FGD4Q96M96 766 aa15.83■□□□□ 0.12
CLIP1-216ENST00000541410 PCYT2Q99447 389 aa15.83■□□□□ 0.12
CLIP1-216ENST00000541410 EFCC1Q9HA90 598 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms