RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 NFU1Q9UMS0 254 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 COL4A3BPQ9Y5P4 624 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 FTCDO95954 541 aa18.71■□□□□ 0.59
SPIDR-227ENST00000541342 PAFAH1B1P43034 410 aa18.71■□□□□ 0.59
SPIDR-227ENST00000541342 CFAP221Q4G0U5 840 aa18.71■□□□□ 0.59
SPIDR-227ENST00000541342 RBM46Q8TBY0 533 aaKnown RBP18.71■□□□□ 0.59
SPIDR-227ENST00000541342 HOXC10Q9NYD6 342 aa18.71■□□□□ 0.59
SPIDR-227ENST00000541342 PACSIN2Q9UNF0 486 aaPredicted RBP18.71■□□□□ 0.59
SPIDR-227ENST00000541342 MYH11P35749 1972 aa18.71■□□□□ 0.59
SPIDR-227ENST00000541342 A0A0G2JMZ2 1700 aa18.71■□□□□ 0.59
SPIDR-227ENST00000541342 NAB2Q15742 525 aa18.71■□□□□ 0.59
SPIDR-227ENST00000541342 GLE1Q53GS7 698 aaKnown RBP18.71■□□□□ 0.59
SPIDR-227ENST00000541342 MOB2Q70IA6 237 aa18.71■□□□□ 0.59
SPIDR-227ENST00000541342 TADA2BQ86TJ2 420 aa18.71■□□□□ 0.59
SPIDR-227ENST00000541342 ZC3H3Q8IXZ2 948 aaKnown RBP18.71■□□□□ 0.59
SPIDR-227ENST00000541342 PACSIN1Q9BY11 444 aa18.71■□□□□ 0.59
SPIDR-227ENST00000541342 PPP1R12BO60237 982 aaPredicted RBP18.71■□□□□ 0.58
SPIDR-227ENST00000541342 OPA1O60313 960 aa18.71■□□□□ 0.58
SPIDR-227ENST00000541342 TBCAO75347 108 aaKnown RBP18.71■□□□□ 0.58
SPIDR-227ENST00000541342 NNTQ13423 1086 aa18.71■□□□□ 0.58
SPIDR-227ENST00000541342 PLS1Q14651 629 aa18.71■□□□□ 0.58
SPIDR-227ENST00000541342 SYN2Q92777 582 aaPredicted RBP18.71■□□□□ 0.58
SPIDR-227ENST00000541342 INPP4AQ96PE3 977 aaPredicted RBP18.71■□□□□ 0.58
SPIDR-227ENST00000541342 A1CFQ9NQ94 594 aaKnown RBP18.71■□□□□ 0.58
SPIDR-227ENST00000541342 CYP39A1Q9NYL5 469 aa18.71■□□□□ 0.58
SPIDR-227ENST00000541342 TESPA1A2RU30 521 aaPredicted RBP18.7■□□□□ 0.58
SPIDR-227ENST00000541342 SERPING1P05155 500 aa18.7■□□□□ 0.58
SPIDR-227ENST00000541342 DNA2P51530 1060 aa18.7■□□□□ 0.58
SPIDR-227ENST00000541342 POLR2FP61218 127 aaKnown RBP18.7■□□□□ 0.58
SPIDR-227ENST00000541342 VSIG10LQ86VR7 867 aa18.7■□□□□ 0.58
SPIDR-227ENST00000541342 CLMNQ96JQ2 1002 aa18.7■□□□□ 0.58
SPIDR-227ENST00000541342 PCDHGC5Q9Y5F6 944 aa18.7■□□□□ 0.58
SPIDR-227ENST00000541342 CSADQ9Y600 493 aa18.7■□□□□ 0.58
SPIDR-227ENST00000541342 DOCK5Q9H7D0 1870 aa18.7■□□□□ 0.58
SPIDR-227ENST00000541342 MYPNQ86TC9 1320 aa18.7■□□□□ 0.58
SPIDR-227ENST00000541342 WDR81Q562E7 1941 aa18.7■□□□□ 0.58
SPIDR-227ENST00000541342 A0A087X0T9 212 aa18.7■□□□□ 0.58
SPIDR-227ENST00000541342 FAM228BP0C875 321 aa18.7■□□□□ 0.58
SPIDR-227ENST00000541342 SLC9C1Q4G0N8 1177 aa18.7■□□□□ 0.58
SPIDR-227ENST00000541342 SFMBT2Q5VUG0 894 aa18.7■□□□□ 0.58
SPIDR-227ENST00000541342 LSM14BQ9BX40 385 aaKnown RBP18.7■□□□□ 0.58
SPIDR-227ENST00000541342 ELP3Q9H9T3 547 aa18.7■□□□□ 0.58
SPIDR-227ENST00000541342 FAM169AQ9Y6X4 670 aa18.7■□□□□ 0.58
SPIDR-227ENST00000541342 HSF2BPO75031 334 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 HEXIM1O94992 359 aaKnown RBP18.69■□□□□ 0.58
SPIDR-227ENST00000541342 NR3C2P08235 984 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 KCNA1Q09470 495 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 PDCLQ13371 301 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 MEI1Q5TIA1 1274 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 KCTD16Q68DU8 428 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 NEK9Q8TD19 979 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 L3MBTL3Q96JM7 780 aaPredicted RBP18.69■□□□□ 0.58
SPIDR-227ENST00000541342 CEP63Q96MT8 703 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 ACAD9Q9H845 621 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 EPB41L5Q9HCM4 733 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 OLFML3Q9NRN5 406 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 TBC1D22BQ9NU19 505 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 P4HBP07237 508 aaKnown RBP18.69■□□□□ 0.58
SPIDR-227ENST00000541342 GUCY2DQ02846 1103 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 KNOP1Q1ED39 458 aaKnown RBP18.69■□□□□ 0.58
SPIDR-227ENST00000541342 TRIM59Q8IWR1 403 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 KAT2BQ92831 832 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 FIZ1Q96SL8 496 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 TSKSQ9UJT2 592 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 IRF6O14896 467 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 RGS20O76081 388 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 CCNE2O96020 404 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 NAP1L1P55209 391 aaKnown RBP18.69■□□□□ 0.58
SPIDR-227ENST00000541342 BMT2Q1RMZ1 405 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 CASKIN2Q8WXE0 1202 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 CDCA5Q96FF9 252 aa18.69■□□□□ 0.58
SPIDR-227ENST00000541342 CCDC43Q96MW1 224 aaKnown RBP18.69■□□□□ 0.58
SPIDR-227ENST00000541342 A0A087WUV0 522 aaPredicted RBP18.68■□□□□ 0.58
SPIDR-227ENST00000541342 CCND2P30279 289 aa18.68■□□□□ 0.58
SPIDR-227ENST00000541342 SLC18A3Q16572 532 aa18.68■□□□□ 0.58
SPIDR-227ENST00000541342 UGCGQ16739 394 aa18.68■□□□□ 0.58
SPIDR-227ENST00000541342 EDRF1Q3B7T1 1238 aa18.68■□□□□ 0.58
SPIDR-227ENST00000541342 TRAF3IP3Q9Y228 551 aa18.68■□□□□ 0.58
SPIDR-227ENST00000541342 SAMM50Q9Y512 469 aa18.68■□□□□ 0.58
SPIDR-227ENST00000541342 FAM13AO94988 1023 aa18.68■□□□□ 0.58
SPIDR-227ENST00000541342 GCNT3O95395 438 aa18.68■□□□□ 0.58
SPIDR-227ENST00000541342 GAP43P17677 238 aa18.68■□□□□ 0.58
SPIDR-227ENST00000541342 NMT1P30419 496 aaKnown RBP18.68■□□□□ 0.58
SPIDR-227ENST00000541342 IREB2P48200 963 aaKnown RBP18.68■□□□□ 0.58
SPIDR-227ENST00000541342 ZNF131P52739 623 aa18.68■□□□□ 0.58
SPIDR-227ENST00000541342 IFT20Q8IY31 132 aa18.68■□□□□ 0.58
SPIDR-227ENST00000541342 MYCT1Q8N699 235 aa18.68■□□□□ 0.58
SPIDR-227ENST00000541342 RNF14Q9UBS8 474 aa18.68■□□□□ 0.58
SPIDR-227ENST00000541342 GRID2IPA4D2P6 1211 aa18.67■□□□□ 0.58
SPIDR-227ENST00000541342 MARSP56192 900 aaKnown RBP18.67■□□□□ 0.58
SPIDR-227ENST00000541342 ADAM9Q13443 819 aa18.67■□□□□ 0.58
SPIDR-227ENST00000541342 DPY19L2P1Q6NXN4 242 aa18.67■□□□□ 0.58
SPIDR-227ENST00000541342 PPP4R3CPQ6ZMV5 832 aa18.67■□□□□ 0.58
SPIDR-227ENST00000541342 IFT81Q8WYA0 676 aa18.67■□□□□ 0.58
SPIDR-227ENST00000541342 OTUD5Q96G74 571 aa18.67■□□□□ 0.58
SPIDR-227ENST00000541342 KRT12Q99456 494 aa18.67■□□□□ 0.58
SPIDR-227ENST00000541342 ASTN1O14525 1302 aa18.67■□□□□ 0.58
SPIDR-227ENST00000541342 EBAG9O00559 213 aa18.67■□□□□ 0.58
SPIDR-227ENST00000541342 EPHX2P34913 555 aa18.67■□□□□ 0.58
SPIDR-227ENST00000541342 CCDC40Q4G0X9 1142 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms