RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 SLC24A5Q71RS6 500 aa20.35■□□□□ 0.85
SNRPA1-203ENST00000540017 RNF149Q8NC42 400 aa20.35■□□□□ 0.85
SNRPA1-203ENST00000540017 C17orf80Q9BSJ5 609 aa20.35■□□□□ 0.85
SNRPA1-203ENST00000540017 MTUS1Q9ULD2 1270 aa20.35■□□□□ 0.85
SNRPA1-203ENST00000540017 MYO9BQ13459 2157 aa20.35■□□□□ 0.85
SNRPA1-203ENST00000540017 ARHGEF35A5YM69 484 aa20.34■□□□□ 0.85
SNRPA1-203ENST00000540017 E9PMD0 336 aa20.34■□□□□ 0.85
SNRPA1-203ENST00000540017 ASAP2O43150 1006 aa20.34■□□□□ 0.85
SNRPA1-203ENST00000540017 HSP90AA1P07900 732 aaKnown RBP20.34■□□□□ 0.85
SNRPA1-203ENST00000540017 LINC00271P0C7V0 271 aa20.34■□□□□ 0.85
SNRPA1-203ENST00000540017 FOSL2P15408 326 aa20.34■□□□□ 0.85
SNRPA1-203ENST00000540017 GLRA2P23416 452 aa20.34■□□□□ 0.85
SNRPA1-203ENST00000540017 ERVK-21P61565 698 aa20.34■□□□□ 0.85
SNRPA1-203ENST00000540017 CAPSQ13938 189 aa20.34■□□□□ 0.85
SNRPA1-203ENST00000540017 FAM43BQ6ZT52 329 aaPredicted RBP20.34■□□□□ 0.85
SNRPA1-203ENST00000540017 PNMA5Q96PV4 448 aa20.34■□□□□ 0.85
SNRPA1-203ENST00000540017 TGS1Q96RS0 853 aaKnown RBP20.34■□□□□ 0.85
SNRPA1-203ENST00000540017 POLR3FQ9H1D9 316 aaPredicted RBP20.34■□□□□ 0.85
SNRPA1-203ENST00000540017 BHMT2Q9H2M3 363 aa20.34■□□□□ 0.85
SNRPA1-203ENST00000540017 POLD4Q9HCU8 107 aa20.34■□□□□ 0.85
SNRPA1-203ENST00000540017 C1orf112Q9NSG2 853 aa20.34■□□□□ 0.85
SNRPA1-203ENST00000540017 STK24Q9Y6E0 443 aa20.34■□□□□ 0.85
SNRPA1-203ENST00000540017 TRANK1O15050 2925 aa20.34■□□□□ 0.85
SNRPA1-203ENST00000540017 CYP11B2P19099 503 aa20.33■□□□□ 0.85
SNRPA1-203ENST00000540017 SFPQP23246 707 aaKnown RBP eCLIP20.33■□□□□ 0.85
SNRPA1-203ENST00000540017 CEBPZQ03701 1054 aaKnown RBP20.33■□□□□ 0.85
SNRPA1-203ENST00000540017 GRB10Q13322 594 aa20.33■□□□□ 0.85
SNRPA1-203ENST00000540017 MXD4Q14582 209 aaPredicted RBP20.33■□□□□ 0.85
SNRPA1-203ENST00000540017 SRGAP1Q7Z6B7 1085 aa20.33■□□□□ 0.85
SNRPA1-203ENST00000540017 PLIN2Q99541 437 aa20.33■□□□□ 0.85
SNRPA1-203ENST00000540017 INO80BQ9C086 356 aaPredicted RBP20.33■□□□□ 0.85
SNRPA1-203ENST00000540017 ADGRA3Q8IWK6 1321 aa20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 PRUNE2Q8WUY3 3088 aa20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 BMP15O95972 392 aa20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 STAG3L1P0CL83 205 aa20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 ZSCAN20P17040 1043 aaPredicted RBP20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 PTENP60484 403 aa20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 PKP1Q13835 747 aa20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 ZRSR1Q15695 479 aaKnown RBP20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 HYIQ5T013 277 aa20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 FAM102BQ5T8I3 360 aa20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 FOXD4L5Q5VV16 416 aaPredicted RBP20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 CATSPER4Q7RTX7 472 aa20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 MCPH1Q8NEM0 835 aa20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 FOXD4L4Q8WXT5 416 aaPredicted RBP20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 BSNDQ8WZ55 320 aa20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 USP28Q96RU2 1077 aa20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 GAS2L1Q99501 681 aaPredicted RBP20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 ZSCAN16Q9H4T2 348 aaPredicted RBP20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 LRFN2Q9ULH4 789 aa20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 DNM3Q9UQ16 869 aa20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 PCDHB7Q9Y5E2 793 aa20.32■□□□□ 0.84
SNRPA1-203ENST00000540017 REV3LO60673 3130 aa20.31■□□□□ 0.84
SNRPA1-203ENST00000540017 LPXNO60711 386 aa20.31■□□□□ 0.84
SNRPA1-203ENST00000540017 EYA4O95677 639 aa20.31■□□□□ 0.84
SNRPA1-203ENST00000540017 MARCKSP29966 332 aaPredicted RBP20.31■□□□□ 0.84
SNRPA1-203ENST00000540017 HOXA11P31270 313 aaPredicted RBP20.31■□□□□ 0.84
SNRPA1-203ENST00000540017 PAN2Q504Q3 1202 aaKnown RBP20.31■□□□□ 0.84
SNRPA1-203ENST00000540017 ECHDC2Q86YB7 292 aa20.31■□□□□ 0.84
SNRPA1-203ENST00000540017 FIBCD1Q8N539 461 aa20.31■□□□□ 0.84
SNRPA1-203ENST00000540017 GDPD5Q8WTR4 605 aa20.31■□□□□ 0.84
SNRPA1-203ENST00000540017 RNF19AQ9NV58 838 aa20.31■□□□□ 0.84
SNRPA1-203ENST00000540017 TMEM161AQ9NX61 479 aa20.31■□□□□ 0.84
SNRPA1-203ENST00000540017 PIN4Q9Y237 131 aaKnown RBP20.31■□□□□ 0.84
SNRPA1-203ENST00000540017 COL4A4P53420 1690 aaPredicted RBP20.3■□□□□ 0.84
SNRPA1-203ENST00000540017 A0A0U1RQF3 1178 aa20.3■□□□□ 0.84
SNRPA1-203ENST00000540017 FGFR1P11362 822 aa20.3■□□□□ 0.84
SNRPA1-203ENST00000540017 ATF7P17544 494 aaPredicted RBP20.3■□□□□ 0.84
SNRPA1-203ENST00000540017 IGFBP4P22692 258 aa20.3■□□□□ 0.84
SNRPA1-203ENST00000540017 PHKA2P46019 1235 aa20.3■□□□□ 0.84
SNRPA1-203ENST00000540017 POU5F1BQ06416 359 aa20.3■□□□□ 0.84
SNRPA1-203ENST00000540017 BTG3Q14201 252 aaPredicted RBP20.3■□□□□ 0.84
SNRPA1-203ENST00000540017 TMEM119Q4V9L6 283 aa20.3■□□□□ 0.84
SNRPA1-203ENST00000540017 EPC2Q52LR7 807 aa20.3■□□□□ 0.84
SNRPA1-203ENST00000540017 CABP7Q86V35 215 aa20.3■□□□□ 0.84
SNRPA1-203ENST00000540017 IFNLR1Q8IU57 520 aaPredicted RBP20.3■□□□□ 0.84
SNRPA1-203ENST00000540017 MAFAQ8NHW3 353 aaPredicted RBP20.3■□□□□ 0.84
SNRPA1-203ENST00000540017 LRRC15Q8TF66 581 aa20.3■□□□□ 0.84
SNRPA1-203ENST00000540017 AK8Q96MA6 479 aa20.3■□□□□ 0.84
SNRPA1-203ENST00000540017 ELAC1Q9H777 363 aaKnown RBP20.3■□□□□ 0.84
SNRPA1-203ENST00000540017 CHST12Q9NRB3 414 aa20.3■□□□□ 0.84
SNRPA1-203ENST00000540017 AGPAT5Q9NUQ2 364 aa20.3■□□□□ 0.84
SNRPA1-203ENST00000540017 FBXO2Q9UK22 296 aaPredicted RBP20.3■□□□□ 0.84
SNRPA1-203ENST00000540017 LONP1P36776 959 aaKnown RBP20.29■□□□□ 0.84
SNRPA1-203ENST00000540017 MBTD1Q05BQ5 628 aa20.29■□□□□ 0.84
SNRPA1-203ENST00000540017 TFDP1Q14186 410 aa20.29■□□□□ 0.84
SNRPA1-203ENST00000540017 SPECC1Q5M775 1068 aa20.29■□□□□ 0.84
SNRPA1-203ENST00000540017 USP49Q70CQ1 688 aa20.29■□□□□ 0.84
SNRPA1-203ENST00000540017 ZNF598Q86UK7 904 aaKnown RBP20.29■□□□□ 0.84
SNRPA1-203ENST00000540017 TMEM192Q8IY95 271 aa20.29■□□□□ 0.84
SNRPA1-203ENST00000540017 CMTR2Q8IYT2 770 aaKnown RBP20.29■□□□□ 0.84
SNRPA1-203ENST00000540017 RUSC1Q9BVN2 902 aa20.29■□□□□ 0.84
SNRPA1-203ENST00000540017 MRPL42Q9Y6G3 142 aaKnown RBP20.29■□□□□ 0.84
SNRPA1-203ENST00000540017 FNDC1Q4ZHG4 1894 aaPredicted RBP20.28■□□□□ 0.84
SNRPA1-203ENST00000540017 NLRC5Q86WI3 1866 aa20.28■□□□□ 0.84
SNRPA1-203ENST00000540017 LRRIQ4A6NIV6 560 aa20.28■□□□□ 0.84
SNRPA1-203ENST00000540017 INO80B-WBP1J3KQ70 363 aa20.28■□□□□ 0.84
SNRPA1-203ENST00000540017 ZSCAN22P10073 491 aaPredicted RBP20.28■□□□□ 0.84
SNRPA1-203ENST00000540017 AMHR2Q16671 573 aa20.28■□□□□ 0.84
SNRPA1-203ENST00000540017 TWF2Q6IBS0 349 aaKnown RBP20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms