RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 FAM102BQ5T8I3 360 aa14.41□□□□□ -0.1
CCDC42-202ENST00000539522 TAS1R3Q7RTX0 852 aa14.41□□□□□ -0.1
CCDC42-202ENST00000539522 FAM228AQ86W67 206 aa14.41□□□□□ -0.1
CCDC42-202ENST00000539522 LINC01599Q8WXQ3 324 aa14.41□□□□□ -0.1
CCDC42-202ENST00000539522 KIFC3Q9BVG8 833 aa14.41□□□□□ -0.1
CCDC42-202ENST00000539522 FGFBP2Q9BYJ0 223 aa14.41□□□□□ -0.1
CCDC42-202ENST00000539522 TMX1Q9H3N1 280 aa14.41□□□□□ -0.1
CCDC42-202ENST00000539522 FAM13BQ9NYF5 915 aa14.41□□□□□ -0.1
CCDC42-202ENST00000539522 FRMD3A2A2Y4 597 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 GAS2O43903 313 aaKnown RBP14.4□□□□□ -0.1
CCDC42-202ENST00000539522 KLRC4O43908 158 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 MGEA5O60502 916 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 ZNF202O95125 648 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 SLFN14P0C7P3 912 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 GHRP10912 638 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 DARSP14868 501 aaKnown RBP14.4□□□□□ -0.1
CCDC42-202ENST00000539522 CRYBB1P53674 252 aaPredicted RBP14.4□□□□□ -0.1
CCDC42-202ENST00000539522 AMHR2Q16671 573 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 PLEKHG4Q58EX7 1191 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 CDCA2Q69YH5 1023 aaPredicted RBP14.4□□□□□ -0.1
CCDC42-202ENST00000539522 CNNM4Q6P4Q7 775 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 DYMQ7RTS9 669 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 DEFB128Q7Z7B8 93 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 RTN4RL1Q86UN2 441 aaPredicted RBP14.4□□□□□ -0.1
CCDC42-202ENST00000539522 IFNLR1Q8IU57 520 aaPredicted RBP14.4□□□□□ -0.1
CCDC42-202ENST00000539522 CCDC155Q8N6L0 562 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 IQUBQ8NA54 791 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 MCPH1Q8NEM0 835 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 RASSF8Q8NHQ8 419 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 GPT2Q8TD30 523 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 PSPC1Q8WXF1 523 aaKnown RBP14.4□□□□□ -0.1
CCDC42-202ENST00000539522 DDX12PQ92771 950 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 PAGE5Q96GU1 130 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 NLRP4Q96MN2 994 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 TRIM9Q9C026 710 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 ERVK-5Q9HDB9 667 aa14.4□□□□□ -0.1
CCDC42-202ENST00000539522 SRGAP2CP0DJJ0 459 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 TMOD1P28289 359 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 CD52P31358 61 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 SYKP43405 635 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 PTENP60484 403 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 MBTD1Q05BQ5 628 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 EHHADHQ08426 723 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 CUL4BQ13620 913 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 TMEM240Q5SV17 173 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 C9orf50Q5SZB4 431 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 KRBA2Q6ZNG9 492 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 SV2BQ7L1I2 683 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 RNF149Q8NC42 400 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 GLIS3Q8NEA6 775 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 DBF4BQ8NFT6 615 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 TCP11Q8WWU5 503 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 HPS3Q969F9 1004 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 MAP7D2Q96T17 732 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 C7orf25Q9BPX7 421 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 JPH2Q9BR39 696 aaPredicted RBP14.39□□□□□ -0.11
CCDC42-202ENST00000539522 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.39□□□□□ -0.11
CCDC42-202ENST00000539522 CCDC113Q9H0I3 377 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 BLZF1Q9H2G9 400 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 TNMDQ9H2S6 317 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 IL23AQ9NPF7 189 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 KCND2Q9NZV8 630 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 GINS2Q9Y248 185 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 USP20Q9Y2K6 914 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 NR2E3Q9Y5X4 410 aa14.39□□□□□ -0.11
CCDC42-202ENST00000539522 GBF1Q92538 1859 aa14.38□□□□□ -0.11
CCDC42-202ENST00000539522 EIF4BP23588 611 aaKnown RBP14.38□□□□□ -0.11
CCDC42-202ENST00000539522 NPTX2P47972 431 aa14.38□□□□□ -0.11
CCDC42-202ENST00000539522 FPGSQ05932 587 aa14.38□□□□□ -0.11
CCDC42-202ENST00000539522 FAM160A1Q05DH4 1040 aa14.38□□□□□ -0.11
CCDC42-202ENST00000539522 RASIP1Q5U651 963 aa14.38□□□□□ -0.11
CCDC42-202ENST00000539522 TSHZ1Q6ZSZ6 1077 aa14.38□□□□□ -0.11
CCDC42-202ENST00000539522 RSPH3Q86UC2 560 aa14.38□□□□□ -0.11
CCDC42-202ENST00000539522 ZNF410Q86VK4 478 aa14.38□□□□□ -0.11
CCDC42-202ENST00000539522 EXOC8Q8IYI6 725 aa14.38□□□□□ -0.11
CCDC42-202ENST00000539522 SYAP1Q96A49 352 aaPredicted RBP14.38□□□□□ -0.11
CCDC42-202ENST00000539522 CCDC43Q96MW1 224 aaKnown RBP14.38□□□□□ -0.11
CCDC42-202ENST00000539522 NTPCRQ9BSD7 190 aaKnown RBP14.38□□□□□ -0.11
CCDC42-202ENST00000539522 STRA6Q9BX79 667 aa14.38□□□□□ -0.11
CCDC42-202ENST00000539522 CUEDC2Q9H467 287 aa14.38□□□□□ -0.11
CCDC42-202ENST00000539522 CXXC1Q9P0U4 656 aaPredicted RBP14.38□□□□□ -0.11
CCDC42-202ENST00000539522 PADI3Q9ULW8 664 aa14.38□□□□□ -0.11
CCDC42-202ENST00000539522 CHD9Q3L8U1 2897 aa14.38□□□□□ -0.11
CCDC42-202ENST00000539522 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.37□□□□□ -0.11
CCDC42-202ENST00000539522 HOXA11P31270 313 aaPredicted RBP14.37□□□□□ -0.11
CCDC42-202ENST00000539522 RFC2P35250 354 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 NAMPTP43490 491 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 AFMP43652 599 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 DNM2P50570 870 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 CASP5P51878 434 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 PEX3P56589 373 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 POU5F1BQ06416 359 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 DSC3Q14574 896 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 MXD4Q14582 209 aaPredicted RBP14.37□□□□□ -0.11
CCDC42-202ENST00000539522 ZNF365Q70YC5 407 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 CRIPAKQ8N1N5 446 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 TMEM199Q8N511 208 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 NLRP7Q8WX94 980 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 KIFAP3Q92845 792 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 ERCC4Q92889 916 aaPredicted RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms