RNA–Protein interactions for RNA: ENST00000537641.5

CPSF7-218, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 1,728 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-218ENST00000537641 MKNK1Q9BUB5 465 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 TMEM109Q9BVC6 243 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 STK33Q9BYT3 514 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 NSRP1Q9H0G5 558 aaKnown RBP13.16□□□□□ -0.3
CPSF7-218ENST00000537641 STMN4Q9H169 189 aaPredicted RBP13.16□□□□□ -0.3
CPSF7-218ENST00000537641 PABPC3Q9H361 631 aaKnown RBP13.16□□□□□ -0.3
CPSF7-218ENST00000537641 PARP2Q9UGN5 583 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 TPX2Q9ULW0 747 aaKnown RBP13.16□□□□□ -0.3
CPSF7-218ENST00000537641 ATP8A1Q9Y2Q0 1164 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 SLX4Q8IY92 1834 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 SYNGAP1Q96PV0 1343 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 DCDC2CA8MYV0 355 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 PPP1R12BO60237 982 aaPredicted RBP13.16□□□□□ -0.3
CPSF7-218ENST00000537641 MGRN1O60291 552 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 EVI5O60447 810 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 CTNND1O60716 968 aaKnown RBP13.16□□□□□ -0.3
CPSF7-218ENST00000537641 CAND2O75155 1236 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 APBA3O96018 575 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 AGTP01019 485 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 EZRP15311 586 aaKnown RBP13.16□□□□□ -0.3
CPSF7-218ENST00000537641 PMS2P54278 862 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 Q4G0T1 1027 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 CATSPER3Q86XQ3 398 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 CLEC10AQ8IUN9 316 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 ETNPPLQ8TBG4 499 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 ATXN2LQ8WWM7 1075 aaKnown RBP13.16□□□□□ -0.3
CPSF7-218ENST00000537641 BORCS6Q96GS4 357 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 ZNF317Q96PQ6 595 aaPredicted RBP13.16□□□□□ -0.3
CPSF7-218ENST00000537641 SYT11Q9BT88 431 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 EPB41L4BQ9H329 900 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 OLFML3Q9NRN5 406 aa13.16□□□□□ -0.3
CPSF7-218ENST00000537641 CNOT7Q9UIV1 285 aaKnown RBP13.16□□□□□ -0.3
CPSF7-218ENST00000537641 TNS1Q9HBL0 1735 aaKnown RBP13.16□□□□□ -0.3
CPSF7-218ENST00000537641 FRMPD4Q14CM0 1322 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 USP17L10C9JJH3 530 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 PPIP5K2O43314 1243 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 PHF2O75151 1096 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 TBCAO75347 108 aaKnown RBP13.15□□□□□ -0.3
CPSF7-218ENST00000537641 GGPS1O95749 300 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 RFX1P22670 979 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 STAT3P40763 770 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 KLRC3Q07444 240 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 TCEAL1Q15170 157 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 SLC15A2Q16348 729 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 PTPROQ16827 1216 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 KIAA1755Q5JYT7 1200 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 STRIP1Q5VSL9 837 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 MSL1Q68DK7 614 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 TTBK2Q6IQ55 1244 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 STYK1Q6J9G0 422 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 PIGWQ7Z7B1 504 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 JAMLQ86YT9 394 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 PROCA1Q8NCQ7 364 aaPredicted RBP13.15□□□□□ -0.3
CPSF7-218ENST00000537641 SLC35G2Q8TBE7 412 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 CRYGNQ8WXF5 182 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 ATP6V0A4Q9HBG4 840 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 DONSONQ9NYP3 566 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 PNMA2Q9UL42 364 aa13.15□□□□□ -0.3
CPSF7-218ENST00000537641 PFASO15067 1338 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 CFAP73A6NFT4 308 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 SPDYE3A6NKU9 549 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 PHF20L1A8MW92 1017 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 MIF4GDA9UHW6 222 aaKnown RBP13.14□□□□□ -0.31
CPSF7-218ENST00000537641 MMEP08473 750 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 CHN1P15882 459 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 CHRNA3P32297 505 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 PSMC2P35998 433 aaKnown RBP13.14□□□□□ -0.31
CPSF7-218ENST00000537641 NFIAQ12857 509 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 MAPK7Q13164 816 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 C6orf118Q5T5N4 469 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 DCAF12L1Q5VU92 463 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 C11orf63Q6NUN7 778 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 ZDHHC24Q6UX98 284 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 FAM228AQ86W67 206 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 DNAAF5Q86Y56 855 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 RHOT2Q8IXI1 618 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 FAM186BQ8IYM0 893 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 ZNF622Q969S3 477 aaKnown RBP eCLIP13.14□□□□□ -0.317e-7■□□□□ 9.5
CPSF7-218ENST00000537641 VTI1AQ96AJ9 217 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 FAM20AQ96MK3 541 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 RUNDC3BQ96NL0 473 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 POLR3CQ9BUI4 534 aaPredicted RBP13.14□□□□□ -0.31
CPSF7-218ENST00000537641 MTRF1LQ9UGC7 380 aaKnown RBP13.14□□□□□ -0.31
CPSF7-218ENST00000537641 ODF2LQ9ULJ1 636 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 SLC12A4Q9UP95 1085 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 IGSF9BQ9UPX0 1349 aa13.14□□□□□ -0.31
CPSF7-218ENST00000537641 ANKRD62A6NC57 917 aa13.13□□□□□ -0.31
CPSF7-218ENST00000537641 MPHOSPH10O00566 681 aaKnown RBP13.13□□□□□ -0.31
CPSF7-218ENST00000537641 KIAA0391O15091 583 aaKnown RBP13.13□□□□□ -0.31
CPSF7-218ENST00000537641 NPM3O75607 178 aaKnown RBP13.13□□□□□ -0.31
CPSF7-218ENST00000537641 GCNT3O95395 438 aa13.13□□□□□ -0.31
CPSF7-218ENST00000537641 EYA4O95677 639 aa13.13□□□□□ -0.31
CPSF7-218ENST00000537641 SPATA31C1P0DKV0 1188 aa13.13□□□□□ -0.31
CPSF7-218ENST00000537641 CASP4P49662 377 aa13.13□□□□□ -0.31
CPSF7-218ENST00000537641 PABPC4Q13310 644 aaKnown RBP eCLIP13.13□□□□□ -0.31
CPSF7-218ENST00000537641 QRICH1Q2TAL8 776 aa13.13□□□□□ -0.31
CPSF7-218ENST00000537641 GJB7Q6PEY0 223 aa13.13□□□□□ -0.31
CPSF7-218ENST00000537641 DCAF4Q8WV16 495 aa13.13□□□□□ -0.31
CPSF7-218ENST00000537641 SELENOSQ9BQE4 189 aa13.13□□□□□ -0.31
CPSF7-218ENST00000537641 IDI2Q9BXS1 227 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms