RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 ANKS4BQ8N8V4 417 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 ANKRD42Q8N9B4 389 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 RNF169Q8NCN4 708 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 FAM13CQ8NE31 585 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 SSH3Q8TE77 659 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 PTPRN2Q92932 1015 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 CRAMP1Q96RY5 1269 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 PHOX2BQ99453 314 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 MYL10Q9BUA6 226 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 CELF4Q9BZC1 486 aaKnown RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 KRT23Q9C075 422 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 NHEJ1Q9H9Q4 299 aaPredicted RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 RNPEPL1Q9HAU8 725 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 PCDH18Q9HCL0 1135 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 TSPYL4Q9UJ04 414 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 FBXO9Q9UK97 447 aaPredicted RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 SH3GLB1Q9Y371 365 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 MYH7BA7E2Y1 1941 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 MYH15Q9Y2K3 1946 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 SNED1Q8TER0 1413 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 CNTNAP1P78357 1384 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 A8MU76 341 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 TCP11X1B4DZS4 312 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 NVLO15381 856 aaKnown RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 SART1O43290 800 aaKnown RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 TJP3O95049 919 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 CBX6O95503 412 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 OXSR1O95747 527 aaPredicted RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 GH1P01241 217 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 PHKG2P15735 406 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 MZF1P28698 734 aaPredicted RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 ECHS1P30084 290 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 TUBB4BP68371 445 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 HPCAP84074 193 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 NSUN2Q08J23 767 aaKnown RBP eCLIP4.02□□□□□ -1.77
MCF2-210ENST00000536274 FOXD4Q12950 439 aaPredicted RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 MORC3Q14149 939 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 HIC1Q14526 733 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 SLC39A14Q15043 492 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 IFI16Q16666 785 aaKnown RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 SGSM1Q2NKQ1 1148 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 TSNAXIP1Q2TAA8 658 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 TTC39AQ5SRH9 613 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 PIGWQ7Z7B1 504 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 ZNF554Q86TJ5 538 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 SPATA24Q86W54 205 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 IFT20Q8IY31 132 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 MTMR14Q8NCE2 650 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 ASAP3Q8TDY4 903 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 STK32AQ8WU08 396 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 MKL1Q969V6 931 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 AZIN2Q96A70 460 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 LENG1Q96BZ8 264 aaPredicted RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 DTNBP1Q96EV8 351 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 DHTKD1Q96HY7 919 aaPredicted RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 EPSTI1Q96J88 318 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 ZNF333Q96JL9 665 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 NAA15Q9BXJ9 866 aaKnown RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 PUS3Q9BZE2 481 aaKnown RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 FAM129AQ9BZQ8 928 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 MIS12Q9H081 205 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 ADAM7Q9H2U9 754 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 VCXQ9H320 206 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 DENND2DQ9H6A0 471 aaPredicted RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 HAUS4Q9H6D7 363 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 AZI2Q9H6S1 392 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 ARHGEF3Q9NR81 526 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 POLR3EQ9NVU0 708 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 SAMD15Q9P1V8 674 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 USTQ9Y2C2 406 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 ATP8A1Q9Y2Q0 1164 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 TSC22D4Q9Y3Q8 395 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 WASF2Q9Y6W5 498 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 SH3TC1Q8TE82 1336 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 CFAP73A6NFT4 308 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 FAM196BA6NMK8 535 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 DAPK3O43293 454 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 KRT86O43790 486 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 ATP9BO43861 1147 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 DNAJC6O75061 913 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 HALP42357 657 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 PLCD1P51178 756 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 COPB1P53618 953 aaKnown RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 MTTPP55157 894 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 LSAMPQ13449 338 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 PDE1CQ14123 709 aaPredicted RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 SLMAPQ14BN4 828 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 PTPAQ15257 358 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 CFAP157Q5JU67 520 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 SYDE2Q5VT97 1194 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 RESP18Q5W5W9 173 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 THOC7Q6I9Y2 204 aaKnown RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 GRAMD4Q6IC98 578 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 VPS37DQ86XT2 251 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 CLASRPQ8N2M8 674 aaKnown RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 ADAMTS19Q8TE59 1207 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 PIGOQ8TEQ8 1089 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 ATXN2LQ8WWM7 1075 aaKnown RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 PRPF31Q8WWY3 499 aaKnown RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 MTMR8Q96EF0 704 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms