RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 EYA4O95677 639 aa14.43□□□□□ -0.1
VPS28-216ENST00000533806 HOXA11P31270 313 aaPredicted RBP14.43□□□□□ -0.1
VPS28-216ENST00000533806 PTENP60484 403 aa14.43□□□□□ -0.1
VPS28-216ENST00000533806 ERVK-21P61565 698 aa14.43□□□□□ -0.1
VPS28-216ENST00000533806 GRB10Q13322 594 aa14.43□□□□□ -0.1
VPS28-216ENST00000533806 PKP1Q13835 747 aa14.43□□□□□ -0.1
VPS28-216ENST00000533806 PADI6Q6TGC4 694 aa14.43□□□□□ -0.1
VPS28-216ENST00000533806 SRGAP1Q7Z6B7 1085 aa14.43□□□□□ -0.1
VPS28-216ENST00000533806 NPAS4Q8IUM7 802 aa14.43□□□□□ -0.1
VPS28-216ENST00000533806 NLRP4Q96MN2 994 aa14.43□□□□□ -0.1
VPS28-216ENST00000533806 USP28Q96RU2 1077 aa14.43□□□□□ -0.1
VPS28-216ENST00000533806 NFKBIZQ9BYH8 718 aa14.43□□□□□ -0.1
VPS28-216ENST00000533806 GPRC5CQ9NQ84 441 aa14.43□□□□□ -0.1
VPS28-216ENST00000533806 CHST12Q9NRB3 414 aa14.43□□□□□ -0.1
VPS28-216ENST00000533806 FBXO2Q9UK22 296 aaPredicted RBP14.43□□□□□ -0.1
VPS28-216ENST00000533806 STXBP5LQ9Y2K9 1186 aa14.43□□□□□ -0.1
VPS28-216ENST00000533806 DENND3A2RUS2 1198 aa14.42□□□□□ -0.1
VPS28-216ENST00000533806 ARHGEF35A5YM69 484 aa14.42□□□□□ -0.1
VPS28-216ENST00000533806 EPOPA6NHQ4 379 aa14.42□□□□□ -0.1
VPS28-216ENST00000533806 SRGAP2CP0DJJ0 459 aa14.42□□□□□ -0.1
VPS28-216ENST00000533806 ZSCAN22P10073 491 aaPredicted RBP14.42□□□□□ -0.1
VPS28-216ENST00000533806 LONP1P36776 959 aaKnown RBP14.42□□□□□ -0.1
VPS28-216ENST00000533806 NASPP49321 788 aaPredicted RBP14.42□□□□□ -0.1
VPS28-216ENST00000533806 CAPSQ13938 189 aa14.42□□□□□ -0.1
VPS28-216ENST00000533806 ADGRE1Q14246 886 aa14.42□□□□□ -0.1
VPS28-216ENST00000533806 SLC39A14Q15043 492 aa14.42□□□□□ -0.1
VPS28-216ENST00000533806 TMEM119Q4V9L6 283 aa14.42□□□□□ -0.1
VPS28-216ENST00000533806 RNF149Q8NC42 400 aa14.42□□□□□ -0.1
VPS28-216ENST00000533806 MCPH1Q8NEM0 835 aa14.42□□□□□ -0.1
VPS28-216ENST00000533806 LRRC15Q8TF66 581 aa14.42□□□□□ -0.1
VPS28-216ENST00000533806 MYLIPQ8WY64 445 aa14.42□□□□□ -0.1
VPS28-216ENST00000533806 SCLT1Q96NL6 688 aa14.42□□□□□ -0.1
VPS28-216ENST00000533806 YME1L1Q96TA2 773 aa14.42□□□□□ -0.1
VPS28-216ENST00000533806 BHMT2Q9H2M3 363 aa14.42□□□□□ -0.1
VPS28-216ENST00000533806 PRDM12Q9H4Q4 367 aa14.42□□□□□ -0.1
VPS28-216ENST00000533806 ELAC1Q9H777 363 aaKnown RBP14.42□□□□□ -0.1
VPS28-216ENST00000533806 DNM3Q9UQ16 869 aa14.42□□□□□ -0.1
VPS28-216ENST00000533806 SRPRBQ9Y5M8 271 aaKnown RBP14.42□□□□□ -0.1
VPS28-216ENST00000533806 GBF1Q92538 1859 aa14.42□□□□□ -0.1
VPS28-216ENST00000533806 ARID2Q68CP9 1835 aa14.41□□□□□ -0.1
VPS28-216ENST00000533806 A0A0U1RQF3 1178 aa14.41□□□□□ -0.1
VPS28-216ENST00000533806 HSP90AA1P07900 732 aaKnown RBP14.41□□□□□ -0.1
VPS28-216ENST00000533806 POU3F3P20264 500 aaPredicted RBP14.41□□□□□ -0.1
VPS28-216ENST00000533806 SFPQP23246 707 aaKnown RBP eCLIP14.41□□□□□ -0.1
VPS28-216ENST00000533806 PCBP1Q15365 356 aaKnown RBP eCLIP14.41□□□□□ -0.1
VPS28-216ENST00000533806 AMHR2Q16671 573 aa14.41□□□□□ -0.1
VPS28-216ENST00000533806 C1orf186Q6ZWK4 172 aa14.41□□□□□ -0.1
VPS28-216ENST00000533806 ZNF598Q86UK7 904 aaKnown RBP14.41□□□□□ -0.1
VPS28-216ENST00000533806 DAW1Q8N136 415 aa14.41□□□□□ -0.1
VPS28-216ENST00000533806 SPRYD3Q8NCJ5 442 aa14.41□□□□□ -0.1
VPS28-216ENST00000533806 CLP1Q92989 425 aaKnown RBP14.41□□□□□ -0.1
VPS28-216ENST00000533806 POLR3FQ9H1D9 316 aaPredicted RBP14.41□□□□□ -0.1
VPS28-216ENST00000533806 RNF19AQ9NV58 838 aa14.41□□□□□ -0.1
VPS28-216ENST00000533806 TMEM161AQ9NX61 479 aa14.41□□□□□ -0.1
VPS28-216ENST00000533806 LPXNO60711 386 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 F13A1P00488 732 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 STAG3L1P0CL83 205 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 ZSCAN20P17040 1043 aaPredicted RBP14.4□□□□□ -0.1
VPS28-216ENST00000533806 ATF7P17544 494 aaPredicted RBP14.4□□□□□ -0.1
VPS28-216ENST00000533806 MARCKSP29966 332 aaPredicted RBP14.4□□□□□ -0.1
VPS28-216ENST00000533806 PHKA2P46019 1235 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 MBTD1Q05BQ5 628 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 CDCA2Q69YH5 1023 aaPredicted RBP14.4□□□□□ -0.1
VPS28-216ENST00000533806 RINT1Q6NUQ1 792 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 USP49Q70CQ1 688 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 CABP7Q86V35 215 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 ECHDC2Q86YB7 292 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 SYT2Q8N9I0 419 aaPredicted RBP14.4□□□□□ -0.1
VPS28-216ENST00000533806 LINC00301Q8NCQ3 95 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 BSNDQ8WZ55 320 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 CCDC43Q96MW1 224 aaKnown RBP14.4□□□□□ -0.1
VPS28-216ENST00000533806 TGS1Q96RS0 853 aaKnown RBP14.4□□□□□ -0.1
VPS28-216ENST00000533806 C17orf80Q9BSJ5 609 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 CCSER1Q9C0I3 900 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 NT5C3AQ9H0P0 336 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 CSRNP2Q9H175 543 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 AGPAT5Q9NUQ2 364 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 ZDHHC9Q9Y397 364 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 LOXHD1Q8IVV2 1947 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 PRUNE2Q8WUY3 3088 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 ADGRA3Q8IWK6 1321 aa14.4□□□□□ -0.1
VPS28-216ENST00000533806 RFXAPO00287 272 aa14.39□□□□□ -0.11
VPS28-216ENST00000533806 ZNF623O75123 536 aa14.39□□□□□ -0.11
VPS28-216ENST00000533806 SLC12A3P55017 1021 aa14.39□□□□□ -0.11
VPS28-216ENST00000533806 CEBPZQ03701 1054 aaKnown RBP14.39□□□□□ -0.11
VPS28-216ENST00000533806 MAPK7Q13164 816 aa14.39□□□□□ -0.11
VPS28-216ENST00000533806 TFDP1Q14186 410 aa14.39□□□□□ -0.11
VPS28-216ENST00000533806 UBXN11Q5T124 520 aa14.39□□□□□ -0.11
VPS28-216ENST00000533806 FAM102BQ5T8I3 360 aa14.39□□□□□ -0.11
VPS28-216ENST00000533806 MAEAQ7L5Y9 396 aa14.39□□□□□ -0.11
VPS28-216ENST00000533806 CATSPER4Q7RTX7 472 aa14.39□□□□□ -0.11
VPS28-216ENST00000533806 CMTR2Q8IYT2 770 aaKnown RBP14.39□□□□□ -0.11
VPS28-216ENST00000533806 EPSTI1Q96J88 318 aa14.39□□□□□ -0.11
VPS28-216ENST00000533806 CLIC6Q96NY7 704 aa14.39□□□□□ -0.11
VPS28-216ENST00000533806 RUSC1Q9BVN2 902 aa14.39□□□□□ -0.11
VPS28-216ENST00000533806 CERS4Q9HA82 394 aa14.39□□□□□ -0.11
VPS28-216ENST00000533806 BLOC1S4Q9NUP1 217 aa14.39□□□□□ -0.11
VPS28-216ENST00000533806 RNF216Q9NWF9 866 aaPredicted RBP14.39□□□□□ -0.11
VPS28-216ENST00000533806 DACT1Q9NYF0 836 aa14.39□□□□□ -0.11
VPS28-216ENST00000533806 TFIP11Q9UBB9 837 aaKnown RBP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms