RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 MC4RP32245 332 aa5.61□□□□□ -1.51
CD44-235ENST00000532339 ECE1P42892 770 aa5.61□□□□□ -1.51
CD44-235ENST00000532339 HNRNPMP52272 730 aaKnown RBP eCLIP5.61□□□□□ -1.51
CD44-235ENST00000532339 RRADP55042 308 aa5.61□□□□□ -1.51
CD44-235ENST00000532339 TNS2Q63HR2 1409 aa5.61□□□□□ -1.51
CD44-235ENST00000532339 BRWD3Q6RI45 1802 aa5.61□□□□□ -1.51
CD44-235ENST00000532339 NOSTRINQ8IVI9 506 aa5.61□□□□□ -1.51
CD44-235ENST00000532339 PMFBP1Q8TBY8 1022 aa5.61□□□□□ -1.51
CD44-235ENST00000532339 CAMKK2Q96RR4 588 aa5.61□□□□□ -1.51
CD44-235ENST00000532339 SYT17Q9BSW7 474 aa5.61□□□□□ -1.51
CD44-235ENST00000532339 KCNH7Q9NS40 1196 aa5.61□□□□□ -1.51
CD44-235ENST00000532339 GPATCH8Q9UKJ3 1502 aaKnown RBP5.61□□□□□ -1.51
CD44-235ENST00000532339 TESMINQ9Y4I5 508 aa5.61□□□□□ -1.51
CD44-235ENST00000532339 INO80Q9ULG1 1556 aaPredicted RBP5.6□□□□□ -1.51
CD44-235ENST00000532339 TMEM2Q9UHN6 1383 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 FOXS1O43638 330 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 MPIG6BO95866 241 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 MMEP08473 750 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 ADCY8P40145 1251 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 KCNQ1P51787 676 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 SEC23AQ15436 765 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 RNF151Q2KHN1 245 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 C2orf27AQ580R0 203 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 OTOP2Q7RTS6 562 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 OVCH1Q7RTY7 1134 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 BRAPQ7Z569 592 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 SCLYQ96I15 445 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 OR10A5Q9H207 317 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 UCKL1Q9NWZ5 548 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 OAZ3Q9UMX2 235 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 NR2E1Q9Y466 385 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 PCNTO95613 3336 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 RGPD1P0DJD0 1748 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 CDC42BPBQ9Y5S2 1711 aa5.6□□□□□ -1.51
CD44-235ENST00000532339 TCRBV16S1A1N1A0A5B0 115 aa5.59□□□□□ -1.51
CD44-235ENST00000532339 SLC12A8A0AV02 714 aa5.59□□□□□ -1.51
CD44-235ENST00000532339 FOXP2O15409 715 aa5.59□□□□□ -1.51
CD44-235ENST00000532339 HIP1RO75146 1068 aa5.59□□□□□ -1.51
CD44-235ENST00000532339 CR2P20023 1033 aa5.59□□□□□ -1.51
CD44-235ENST00000532339 TACR2P21452 398 aa5.59□□□□□ -1.51
CD44-235ENST00000532339 SDHAP31040 664 aa5.59□□□□□ -1.51
CD44-235ENST00000532339 NFYCQ13952 458 aa5.59□□□□□ -1.51
CD44-235ENST00000532339 EIF4HQ15056 248 aaKnown RBP5.59□□□□□ -1.51
CD44-235ENST00000532339 UNC5CLQ8IV45 518 aa5.59□□□□□ -1.51
CD44-235ENST00000532339 HIPK4Q8NE63 616 aa5.59□□□□□ -1.51
CD44-235ENST00000532339 ASB15Q8WXK1 588 aa5.59□□□□□ -1.51
CD44-235ENST00000532339 AMNQ9BXJ7 453 aa5.59□□□□□ -1.51
CD44-235ENST00000532339 SRRDQ9UH36 339 aa5.59□□□□□ -1.51
CD44-235ENST00000532339 ASB1Q9Y576 335 aa5.59□□□□□ -1.51
CD44-235ENST00000532339 B3GALT1Q9Y5Z6 326 aa5.59□□□□□ -1.51
CD44-235ENST00000532339 PTCH2Q9Y6C5 1203 aa5.59□□□□□ -1.51
CD44-235ENST00000532339 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.59□□□□□ -1.51
CD44-235ENST00000532339 ERVK-7P63135 1459 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 CLIP1P30622 1438 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 DCCP43146 1447 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 TROQ12816 1431 aaPredicted RBP5.58□□□□□ -1.52
CD44-235ENST00000532339 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.58□□□□□ -1.52
CD44-235ENST00000532339 A0A0G2JNJ9 132 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 ARHGAP6O43182 974 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 AKAP8O43823 692 aaKnown RBP5.58□□□□□ -1.52
CD44-235ENST00000532339 FSHBP01225 129 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 C6P13671 934 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 CD83Q01151 205 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 PRKD1Q15139 912 aaPredicted RBP5.58□□□□□ -1.52
CD44-235ENST00000532339 SPDYAQ5MJ70 313 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 KANK2Q63ZY3 851 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 TMEM200BQ69YZ2 307 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 LRSAM1Q6UWE0 723 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 C2orf69Q8N8R5 385 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 DLG3Q92796 817 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 GBP4Q96PP9 640 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 OSBPL2Q9H1P3 480 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 VPS11Q9H270 941 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 NCOA5Q9HCD5 579 aaKnown RBP5.58□□□□□ -1.52
CD44-235ENST00000532339 MSL2Q9HCI7 577 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 Q9UFV3 132 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 GOLGB1Q14789 3259 aaKnown RBP5.58□□□□□ -1.52
CD44-235ENST00000532339 PREX2Q70Z35 1606 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 NRKQ7Z2Y5 1582 aa5.58□□□□□ -1.52
CD44-235ENST00000532339 DHX29Q7Z478 1369 aaKnown RBP5.57□□□□□ -1.52
CD44-235ENST00000532339 PRAMEF22A3QJZ6 481 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 KIF3BO15066 747 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 CDC14BO60729 498 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 RAD17O75943 681 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 COMTP21964 271 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 GDF5P43026 501 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 MEOX1P50221 254 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 MOGSQ13724 837 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 NOLC1Q14978 699 aaKnown RBP eCLIP5.57□□□□□ -1.52
CD44-235ENST00000532339 TMEM132BQ14DG7 1078 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 TM4SF20Q53R12 229 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 TMEM177Q53S58 311 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 AGBL4Q5VU57 503 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 TRIM68Q6AZZ1 485 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 GRAMD4Q6IC98 578 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 FSTL4Q6MZW2 842 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 CRIP3Q6Q6R5 217 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 USP30Q70CQ3 517 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 LARP4Q71RC2 724 aaKnown RBP eCLIP5.57□□□□□ -1.52
CD44-235ENST00000532339 FGD2Q7Z6J4 655 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms