RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 LOXHD1Q8IVV2 1947 aa16.53■□□□□ 0.24
VPS28-215ENST00000531924 EVPLQ92817 2033 aa16.52■□□□□ 0.24
VPS28-215ENST00000531924 A0A087WZ62 844 aa16.52■□□□□ 0.24
VPS28-215ENST00000531924 SLC37A4O43826 429 aa16.52■□□□□ 0.24
VPS28-215ENST00000531924 MAFO75444 373 aaPredicted RBP16.52■□□□□ 0.24
VPS28-215ENST00000531924 BAG4O95429 457 aaKnown RBP16.52■□□□□ 0.24
VPS28-215ENST00000531924 EYA4O95677 639 aa16.52■□□□□ 0.24
VPS28-215ENST00000531924 SKIP12755 728 aa16.52■□□□□ 0.24
VPS28-215ENST00000531924 CA8P35219 290 aa16.52■□□□□ 0.24
VPS28-215ENST00000531924 ALDH7A1P49419 539 aaKnown RBP16.52■□□□□ 0.24
VPS28-215ENST00000531924 PLCB3Q01970 1234 aa16.52■□□□□ 0.24
VPS28-215ENST00000531924 DRP2Q13474 957 aa16.52■□□□□ 0.24
VPS28-215ENST00000531924 DUSP6Q16828 381 aa16.52■□□□□ 0.24
VPS28-215ENST00000531924 PPP4R3AQ6IN85 833 aa16.52■□□□□ 0.24
VPS28-215ENST00000531924 PIK3AP1Q6ZUJ8 805 aa16.52■□□□□ 0.24
VPS28-215ENST00000531924 ZNF410Q86VK4 478 aa16.52■□□□□ 0.24
VPS28-215ENST00000531924 SMRP1Q8NCR6 262 aa16.52■□□□□ 0.24
VPS28-215ENST00000531924 HELQQ8TDG4 1101 aa16.52■□□□□ 0.24
VPS28-215ENST00000531924 NLRP4Q96MN2 994 aa16.52■□□□□ 0.24
VPS28-215ENST00000531924 FDXACB1Q9BRP7 624 aaPredicted RBP16.52■□□□□ 0.24
VPS28-215ENST00000531924 PHF20Q9BVI0 1012 aa16.52■□□□□ 0.24
VPS28-215ENST00000531924 ORC3Q9UBD5 711 aaPredicted RBP16.52■□□□□ 0.24
VPS28-215ENST00000531924 STK36Q9NRP7 1315 aa16.51■□□□□ 0.23
VPS28-215ENST00000531924 PFKFB2O60825 505 aa16.51■□□□□ 0.23
VPS28-215ENST00000531924 P4HBP07237 508 aaKnown RBP16.51■□□□□ 0.23
VPS28-215ENST00000531924 PBX3P40426 434 aa16.51■□□□□ 0.23
VPS28-215ENST00000531924 POLGP54098 1239 aaPredicted RBP16.51■□□□□ 0.23
VPS28-215ENST00000531924 PPP2R5CQ13362 524 aa16.51■□□□□ 0.23
VPS28-215ENST00000531924 NPY5RQ15761 445 aa16.51■□□□□ 0.23
VPS28-215ENST00000531924 PLA2G4FQ68DD2 849 aa16.51■□□□□ 0.23
VPS28-215ENST00000531924 B3GNT9Q6UX72 402 aa16.51■□□□□ 0.23
VPS28-215ENST00000531924 LRRC55Q6ZSA7 311 aa16.51■□□□□ 0.23
VPS28-215ENST00000531924 ANO5Q75V66 913 aa16.51■□□□□ 0.23
VPS28-215ENST00000531924 CATSPER4Q7RTX7 472 aa16.51■□□□□ 0.23
VPS28-215ENST00000531924 RNF135Q8IUD6 432 aa16.51■□□□□ 0.23
VPS28-215ENST00000531924 CEP170P1Q96L14 293 aa16.51■□□□□ 0.23
VPS28-215ENST00000531924 CYP26B1Q9NR63 512 aa16.51■□□□□ 0.23
VPS28-215ENST00000531924 RNF19AQ9NV58 838 aa16.51■□□□□ 0.23
VPS28-215ENST00000531924 MUTYHQ9UIF7 546 aa16.51■□□□□ 0.23
VPS28-215ENST00000531924 TPCN1Q9ULQ1 816 aa16.51■□□□□ 0.23
VPS28-215ENST00000531924 PIN4Q9Y237 131 aaKnown RBP16.51■□□□□ 0.23
VPS28-215ENST00000531924 USP15Q9Y4E8 981 aaPredicted RBP16.51■□□□□ 0.23
VPS28-215ENST00000531924 IGKV6-21A0A0C4DH24 114 aa16.5■□□□□ 0.23
VPS28-215ENST00000531924 EIF5BO60841 1220 aaKnown RBP16.5■□□□□ 0.23
VPS28-215ENST00000531924 GLP2RO95838 553 aa16.5■□□□□ 0.23
VPS28-215ENST00000531924 ANAPC15P60006 121 aa16.5■□□□□ 0.23
VPS28-215ENST00000531924 CLLU1OSQ5K130 101 aa16.5■□□□□ 0.23
VPS28-215ENST00000531924 NCAPH2Q6IBW4 605 aa16.5■□□□□ 0.23
VPS28-215ENST00000531924 LLGL2Q6P1M3 1020 aa16.5■□□□□ 0.23
VPS28-215ENST00000531924 GLB1LQ6UWU2 654 aa16.5■□□□□ 0.23
VPS28-215ENST00000531924 OTUD6AQ7L8S5 288 aa16.5■□□□□ 0.23
VPS28-215ENST00000531924 RSPH1Q8WYR4 309 aa16.5■□□□□ 0.23
VPS28-215ENST00000531924 TMEM169Q96HH4 297 aa16.5■□□□□ 0.23
VPS28-215ENST00000531924 CARNS1A5YM72 827 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 EML1O00423 815 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 FSCN2O14926 492 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 TBX3O15119 743 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 STBD1O95210 358 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 KRT2P35908 639 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 RFC5P40937 340 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 TECP42680 631 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 PHKA2P46019 1235 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 RNASELQ05823 741 aaKnown RBP16.49■□□□□ 0.23
VPS28-215ENST00000531924 TRIM29Q14134 588 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 SMC1AQ14683 1233 aaKnown RBP16.49■□□□□ 0.23
VPS28-215ENST00000531924 LONRF3Q496Y0 759 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 KSR1Q8IVT5 923 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 SLFN12Q8IYM2 578 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 PSPC1Q8WXF1 523 aaKnown RBP16.49■□□□□ 0.23
VPS28-215ENST00000531924 PGBD4Q96DM1 585 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 RPGRIP1Q96KN7 1286 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 KCNMB3Q9NPA1 279 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 VAV3Q9UKW4 847 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 INPP5FQ9Y2H2 1132 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 PPME1Q9Y570 386 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 COL4A3BPQ9Y5P4 624 aa16.49■□□□□ 0.23
VPS28-215ENST00000531924 KIAA1671Q9BY89 1806 aa16.48■□□□□ 0.23
VPS28-215ENST00000531924 ZC3H11AO75152 810 aaKnown RBP eCLIP16.48■□□□□ 0.237e-6■■■■■ 33.7
VPS28-215ENST00000531924 SRGAP2CP0DJJ0 459 aa16.48■□□□□ 0.23
VPS28-215ENST00000531924 RAB27AP51159 221 aa16.48■□□□□ 0.23
VPS28-215ENST00000531924 AK2P54819 239 aa16.48■□□□□ 0.23
VPS28-215ENST00000531924 NPEPPSP55786 919 aa16.48■□□□□ 0.23
VPS28-215ENST00000531924 BCAR1P56945 870 aa16.48■□□□□ 0.23
VPS28-215ENST00000531924 RBM10P98175 930 aaKnown RBP16.48■□□□□ 0.23
VPS28-215ENST00000531924 EPHA7Q15375 998 aa16.48■□□□□ 0.23
VPS28-215ENST00000531924 HERC4Q5GLZ8 1057 aaPredicted RBP16.48■□□□□ 0.23
VPS28-215ENST00000531924 ZNF598Q86UK7 904 aaKnown RBP16.48■□□□□ 0.23
VPS28-215ENST00000531924 URGCPQ8TCY9 931 aa16.48■□□□□ 0.23
VPS28-215ENST00000531924 OXER1Q8TDS5 423 aa16.48■□□□□ 0.23
VPS28-215ENST00000531924 TCP11Q8WWU5 503 aa16.48■□□□□ 0.23
VPS28-215ENST00000531924 PRPF31Q8WWY3 499 aaKnown RBP16.48■□□□□ 0.23
VPS28-215ENST00000531924 CCDC43Q96MW1 224 aaKnown RBP16.48■□□□□ 0.23
VPS28-215ENST00000531924 CEP89Q96ST8 783 aa16.48■□□□□ 0.23
VPS28-215ENST00000531924 LXNQ9BS40 222 aa16.48■□□□□ 0.23
VPS28-215ENST00000531924 PHF7Q9BWX1 381 aaPredicted RBP16.48■□□□□ 0.23
VPS28-215ENST00000531924 GJB4Q9NTQ9 266 aa16.48■□□□□ 0.23
VPS28-215ENST00000531924 PPP4R2Q9NY27 417 aa16.48■□□□□ 0.23
VPS28-215ENST00000531924 HIDE1A8MVS5 230 aa16.47■□□□□ 0.23
VPS28-215ENST00000531924 DTNBO60941 627 aa16.47■□□□□ 0.23
VPS28-215ENST00000531924 HOXB8P17481 243 aaPredicted RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms