RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 MCM6Q14566 821 aa16.04■□□□□ 0.16
CPSF1-206ENST00000531480 PCBP1Q15365 356 aaKnown RBP eCLIP16.04■□□□□ 0.16
CPSF1-206ENST00000531480 SHHQ15465 462 aa16.04■□□□□ 0.16
CPSF1-206ENST00000531480 C9orf50Q5SZB4 431 aa16.04■□□□□ 0.16
CPSF1-206ENST00000531480 CDCA2Q69YH5 1023 aaPredicted RBP16.04■□□□□ 0.16
CPSF1-206ENST00000531480 KSR1Q8IVT5 923 aa16.04■□□□□ 0.16
CPSF1-206ENST00000531480 TDHQ8IZJ6 230 aa16.04■□□□□ 0.16
CPSF1-206ENST00000531480 TMEM87AQ8NBN3 555 aa16.04■□□□□ 0.16
CPSF1-206ENST00000531480 SEPT8Q92599 483 aa16.04■□□□□ 0.16
CPSF1-206ENST00000531480 FDXACB1Q9BRP7 624 aaPredicted RBP16.04■□□□□ 0.16
CPSF1-206ENST00000531480 IFIH1Q9BYX4 1025 aaKnown RBP16.04■□□□□ 0.16
CPSF1-206ENST00000531480 C17orf75Q9HAS0 396 aa16.04■□□□□ 0.16
CPSF1-206ENST00000531480 GDPD2Q9HCC8 539 aa16.04■□□□□ 0.16
CPSF1-206ENST00000531480 KBTBD4Q9NVX7 518 aa16.04■□□□□ 0.16
CPSF1-206ENST00000531480 PADI3Q9ULW8 664 aa16.04■□□□□ 0.16
CPSF1-206ENST00000531480 NOC2LQ9Y3T9 749 aaKnown RBP16.04■□□□□ 0.16
CPSF1-206ENST00000531480 TTC3P53804 2025 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 EFCAB14O75071 495 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 HIP1RO75146 1068 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 STAT6P42226 847 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 ODR4Q5SWX8 454 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 FAM102BQ5T8I3 360 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 CNNM4Q6P4Q7 775 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 SRGAP1Q7Z6B7 1085 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 FAM228AQ86W67 206 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 IQUBQ8NA54 791 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 RNF149Q8NC42 400 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 RASSF8Q8NHQ8 419 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 NLRP7Q8WX94 980 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 BSNDQ8WZ55 320 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 DRC1Q96MC2 740 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 PYM1Q9BRP8 204 aaKnown RBP16.03■□□□□ 0.16
CPSF1-206ENST00000531480 NTPCRQ9BSD7 190 aaKnown RBP16.03■□□□□ 0.16
CPSF1-206ENST00000531480 GCOM2Q9BZD3 368 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-206ENST00000531480 INO80BQ9C086 356 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-206ENST00000531480 TMX1Q9H3N1 280 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 MAGEF1Q9HAY2 307 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 FAM13BQ9NYF5 915 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 KCNH3Q9ULD8 1083 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 ODF2LQ9ULJ1 636 aa16.03■□□□□ 0.16
CPSF1-206ENST00000531480 GPR182O15218 404 aa16.02■□□□□ 0.16
CPSF1-206ENST00000531480 RPS6KA5O75582 802 aa16.02■□□□□ 0.16
CPSF1-206ENST00000531480 ACTN1P12814 892 aa16.02■□□□□ 0.16
CPSF1-206ENST00000531480 PFKFB1P16118 471 aa16.02■□□□□ 0.16
CPSF1-206ENST00000531480 CD52P31358 61 aa16.02■□□□□ 0.16
CPSF1-206ENST00000531480 NAMPTP43490 491 aa16.02■□□□□ 0.16
CPSF1-206ENST00000531480 GIT2Q14161 759 aa16.02■□□□□ 0.16
CPSF1-206ENST00000531480 TFDP1Q14186 410 aa16.02■□□□□ 0.16
CPSF1-206ENST00000531480 DSC3Q14574 896 aa16.02■□□□□ 0.16
CPSF1-206ENST00000531480 GPBP1Q86WP2 473 aa16.02■□□□□ 0.16
CPSF1-206ENST00000531480 PDILTQ8N807 584 aa16.02■□□□□ 0.16
CPSF1-206ENST00000531480 NLRP4Q96MN2 994 aa16.02■□□□□ 0.16
CPSF1-206ENST00000531480 PPP1R16BQ96T49 567 aa16.02■□□□□ 0.16
CPSF1-206ENST00000531480 FTHL17Q9BXU8 183 aa16.02■□□□□ 0.16
CPSF1-206ENST00000531480 TNMDQ9H2S6 317 aa16.02■□□□□ 0.16
CPSF1-206ENST00000531480 MINDY3Q9H8M7 445 aa16.02■□□□□ 0.16
CPSF1-206ENST00000531480 CXXC1Q9P0U4 656 aaPredicted RBP16.02■□□□□ 0.16
CPSF1-206ENST00000531480 GINS2Q9Y248 185 aa16.02■□□□□ 0.16
CPSF1-206ENST00000531480 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.01■□□□□ 0.15
CPSF1-206ENST00000531480 FRMD3A2A2Y4 597 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 RBAK-RBAKDNI3L0D1 243 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 POLR2DO15514 142 aaKnown RBP16.01■□□□□ 0.15
CPSF1-206ENST00000531480 SRGAP2CP0DJJ0 459 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 PTMSP20962 102 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 PHKA2P46019 1235 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 PAK2Q13177 524 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 IKBKEQ14164 716 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 PPP2R5AQ15172 486 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 SV2BQ7L1I2 683 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 MAEAQ7L5Y9 396 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 OTOP2Q7RTS6 562 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 CRIPAKQ8N1N5 446 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 SPIRE2Q8WWL2 714 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 LINC01599Q8WXQ3 324 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 MRPS27Q92552 414 aaKnown RBP16.01■□□□□ 0.15
CPSF1-206ENST00000531480 DNAJC19Q96DA6 116 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 REEP2Q9BRK0 252 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 PANK2Q9BZ23 570 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 TSPYL2Q9H2G4 693 aaPredicted RBP16.01■□□□□ 0.15
CPSF1-206ENST00000531480 ARHGAP28Q9P2N2 729 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 USP25Q9UHP3 1055 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 ST3GAL5Q9UNP4 418 aa16.01■□□□□ 0.15
CPSF1-206ENST00000531480 SZT2Q5T011 3432 aa16■□□□□ 0.15
CPSF1-206ENST00000531480 ADGRA3Q8IWK6 1321 aa16■□□□□ 0.15
CPSF1-206ENST00000531480 A0A1B0GVL5 298 aa16■□□□□ 0.15
CPSF1-206ENST00000531480 MYMKA6NI61 221 aa16■□□□□ 0.15
CPSF1-206ENST00000531480 ACTN4O43707 911 aaKnown RBP16■□□□□ 0.15
CPSF1-206ENST00000531480 SSBP05455 408 aaKnown RBP eCLIP16■□□□□ 0.15
CPSF1-206ENST00000531480 SLFN14P0C7P3 912 aa16■□□□□ 0.15
CPSF1-206ENST00000531480 PLS3P13797 630 aa16■□□□□ 0.15
CPSF1-206ENST00000531480 SFPQP23246 707 aaKnown RBP eCLIP16■□□□□ 0.15
CPSF1-206ENST00000531480 NPTX2P47972 431 aa16■□□□□ 0.15
CPSF1-206ENST00000531480 WDR5P61964 334 aaKnown RBP16■□□□□ 0.15
CPSF1-206ENST00000531480 MBTD1Q05BQ5 628 aa16■□□□□ 0.15
CPSF1-206ENST00000531480 AMHR2Q16671 573 aa16■□□□□ 0.15
CPSF1-206ENST00000531480 FAM187BQ17R55 369 aa16■□□□□ 0.15
CPSF1-206ENST00000531480 LRIT3Q3SXY7 679 aa16■□□□□ 0.15
CPSF1-206ENST00000531480 PPP4R3CPQ6ZMV5 832 aa16■□□□□ 0.15
CPSF1-206ENST00000531480 RTN4RL1Q86UN2 441 aaPredicted RBP16■□□□□ 0.15
CPSF1-206ENST00000531480 PHOSPHO2Q8TCD6 241 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms