RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 ITPR1Q14643 2758 aa9.69□□□□□ -0.86
SSBP3-212ENST00000528930 GOLGA8AA7E2F4 631 aa9.69□□□□□ -0.86
SSBP3-212ENST00000528930 GOLGA8BA8MQT2 603 aa9.69□□□□□ -0.86
SSBP3-212ENST00000528930 CSPG5O95196 566 aa9.69□□□□□ -0.86
SSBP3-212ENST00000528930 MYCLP12524 364 aaPredicted RBP9.69□□□□□ -0.86
SSBP3-212ENST00000528930 CASTP20810 708 aaKnown RBP9.69□□□□□ -0.86
SSBP3-212ENST00000528930 PSMA5P28066 241 aa9.69□□□□□ -0.86
SSBP3-212ENST00000528930 EVCP57679 992 aa9.69□□□□□ -0.86
SSBP3-212ENST00000528930 MRPS9P82933 396 aaKnown RBP9.69□□□□□ -0.86
SSBP3-212ENST00000528930 RBM10P98175 930 aaKnown RBP9.69□□□□□ -0.86
SSBP3-212ENST00000528930 ARHGAP1Q07960 439 aa9.69□□□□□ -0.86
SSBP3-212ENST00000528930 KCNC3Q14003 757 aa9.69□□□□□ -0.86
SSBP3-212ENST00000528930 NID2Q14112 1375 aa9.69□□□□□ -0.86
SSBP3-212ENST00000528930 TRIM71Q2Q1W2 868 aaKnown RBP9.69□□□□□ -0.86
SSBP3-212ENST00000528930 GREB1Q4ZG55 1949 aa9.69□□□□□ -0.86
SSBP3-212ENST00000528930 PLEKHG4Q58EX7 1191 aa9.69□□□□□ -0.86
SSBP3-212ENST00000528930 GDF6Q6KF10 455 aaPredicted RBP9.69□□□□□ -0.86
SSBP3-212ENST00000528930 RUFY3Q7L099 469 aa9.69□□□□□ -0.86
SSBP3-212ENST00000528930 ADGRA3Q8IWK6 1321 aa9.69□□□□□ -0.86
SSBP3-212ENST00000528930 WDFY3Q8IZQ1 3526 aa9.69□□□□□ -0.86
SSBP3-212ENST00000528930 DBF4BQ8NFT6 615 aa9.69□□□□□ -0.86
SSBP3-212ENST00000528930 TM6SF1Q9BZW5 370 aa9.69□□□□□ -0.86
SSBP3-212ENST00000528930 USP18Q9UMW8 372 aa9.69□□□□□ -0.86
SSBP3-212ENST00000528930 EMSYQ7Z589 1322 aa9.68□□□□□ -0.86
SSBP3-212ENST00000528930 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.68□□□□□ -0.86
SSBP3-212ENST00000528930 FSD2A1L4K1 749 aa9.68□□□□□ -0.86
SSBP3-212ENST00000528930 KPNA6O60684 536 aa9.68□□□□□ -0.86
SSBP3-212ENST00000528930 GH1P01241 217 aa9.68□□□□□ -0.86
SSBP3-212ENST00000528930 CD46P15529 392 aa9.68□□□□□ -0.86
SSBP3-212ENST00000528930 CCND2P30279 289 aa9.68□□□□□ -0.86
SSBP3-212ENST00000528930 METAP2P50579 478 aaKnown RBP eCLIP9.68□□□□□ -0.86
SSBP3-212ENST00000528930 FGD1P98174 961 aa9.68□□□□□ -0.86
SSBP3-212ENST00000528930 SP2Q02086 613 aa9.68□□□□□ -0.86
SSBP3-212ENST00000528930 TBC1D8BQ0IIM8 1120 aa9.68□□□□□ -0.86
SSBP3-212ENST00000528930 TOB2Q14106 344 aaPredicted RBP9.68□□□□□ -0.86
SSBP3-212ENST00000528930 WWC2Q6AWC2 1192 aa9.68□□□□□ -0.86
SSBP3-212ENST00000528930 TMEM184AQ6ZMB5 413 aa9.68□□□□□ -0.86
SSBP3-212ENST00000528930 ZDHHC14Q8IZN3 488 aa9.68□□□□□ -0.86
SSBP3-212ENST00000528930 SMARCC2Q8TAQ2 1214 aa9.68□□□□□ -0.86
SSBP3-212ENST00000528930 AFG1LQ8WV93 481 aa9.68□□□□□ -0.86
SSBP3-212ENST00000528930 DDX1Q92499 740 aaKnown RBP9.68□□□□□ -0.86
SSBP3-212ENST00000528930 GPKOWQ92917 476 aaPredicted RBP eCLIP9.68□□□□□ -0.86
SSBP3-212ENST00000528930 SECISBP2LQ93073 1101 aaKnown RBP9.68□□□□□ -0.86
SSBP3-212ENST00000528930 DLGAP2Q9P1A6 1054 aa9.68□□□□□ -0.86
SSBP3-212ENST00000528930 SMG5Q9UPR3 1016 aaKnown RBP9.68□□□□□ -0.86
SSBP3-212ENST00000528930 MMP3P08254 477 aa9.67□□□□□ -0.86
SSBP3-212ENST00000528930 TGFB3P10600 412 aa9.67□□□□□ -0.86
SSBP3-212ENST00000528930 PDIA3P30101 505 aaKnown RBP9.67□□□□□ -0.86
SSBP3-212ENST00000528930 SEMA3FQ13275 785 aa9.67□□□□□ -0.86
SSBP3-212ENST00000528930 NTRK3Q16288 839 aa9.67□□□□□ -0.86
SSBP3-212ENST00000528930 UBE2SQ16763 222 aa9.67□□□□□ -0.86
SSBP3-212ENST00000528930 ZNF618Q5T7W0 954 aa9.67□□□□□ -0.86
SSBP3-212ENST00000528930 MYSM1Q5VVJ2 828 aa9.67□□□□□ -0.86
SSBP3-212ENST00000528930 SYCE2Q6PIF2 218 aa9.67□□□□□ -0.86
SSBP3-212ENST00000528930 HEATR3Q7Z4Q2 680 aa9.67□□□□□ -0.86
SSBP3-212ENST00000528930 RBM23Q86U06 439 aaKnown RBP9.67□□□□□ -0.86
SSBP3-212ENST00000528930 MAML2Q8IZL2 1156 aaPredicted RBP9.67□□□□□ -0.86
SSBP3-212ENST00000528930 SPPL3Q8TCT6 385 aa9.67□□□□□ -0.86
SSBP3-212ENST00000528930 CUL5Q93034 780 aa9.67□□□□□ -0.86
SSBP3-212ENST00000528930 IL17RAQ96F46 866 aa9.67□□□□□ -0.86
SSBP3-212ENST00000528930 INPP4AQ96PE3 977 aaPredicted RBP9.67□□□□□ -0.86
SSBP3-212ENST00000528930 REPIN1Q9BWE0 567 aaKnown RBP9.67□□□□□ -0.86
SSBP3-212ENST00000528930 IFIH1Q9BYX4 1025 aaKnown RBP9.67□□□□□ -0.86
SSBP3-212ENST00000528930 EPC1Q9H2F5 836 aa9.67□□□□□ -0.86
SSBP3-212ENST00000528930 BCAS3Q9H6U6 928 aa9.67□□□□□ -0.86
SSBP3-212ENST00000528930 PSTPIP2Q9H939 334 aa9.67□□□□□ -0.86
SSBP3-212ENST00000528930 ANKFY1Q9P2R3 1169 aa9.67□□□□□ -0.86
SSBP3-212ENST00000528930 NAP1L2Q9ULW6 460 aaPredicted RBP9.67□□□□□ -0.86
SSBP3-212ENST00000528930 MRVI1Q9Y6F6 885 aa9.67□□□□□ -0.86
SSBP3-212ENST00000528930 C2orf16Q68DN1 1984 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 TICRRQ7Z2Z1 1910 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 CCDC196A0A1B0GTZ2 297 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 SPATA31C2B4DYI2 1134 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 STAM2O75886 525 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 UPP2O95045 317 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 ITGB1P05556 798 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 UBA1P22314 1058 aaKnown RBP9.66□□□□□ -0.86
SSBP3-212ENST00000528930 GUCA2AQ02747 115 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 LAMC2Q13753 1193 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 ZNF528Q3MIS6 628 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 NAALADL2Q58DX5 795 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 BRDTQ58F21 947 aaPredicted RBP9.66□□□□□ -0.86
SSBP3-212ENST00000528930 CELF3Q5SZQ8 465 aaKnown RBP9.66□□□□□ -0.86
SSBP3-212ENST00000528930 PCNX4Q63HM2 1172 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 ANKRD54Q6NXT1 300 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 KCNV1Q6PIU1 500 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 C1orf210Q8IVY1 113 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 SIX5Q8N196 739 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 ADAM32Q8TC27 787 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 KAT2BQ92831 832 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 WNT8BQ93098 351 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 POMKQ9H5K3 350 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 RIC8AQ9NPQ8 531 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 BARHL2Q9NY43 387 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 CACNA2D2Q9NY47 1150 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 RTEL1Q9NZ71 1219 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 DUSP12Q9UNI6 340 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 CYP46A1Q9Y6A2 500 aa9.66□□□□□ -0.86
SSBP3-212ENST00000528930 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.66□□□□□ -0.86
SSBP3-212ENST00000528930 hCG_1984214I3L0E3 225 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms