RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 METTL13Q8N6R0 699 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 SPPL3Q8TCT6 385 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 BBXQ8WY36 941 aaPredicted RBP11.34□□□□□ -0.59
VPS28-204ENST00000526054 FAM167AQ96KS9 214 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 MTMR9Q96QG7 549 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 OSMRQ99650 979 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 ADAM2Q99965 735 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 TMEM60Q9H2L4 133 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 ZSCAN16Q9H4T2 348 aaPredicted RBP11.34□□□□□ -0.59
VPS28-204ENST00000526054 TTC12Q9H892 705 aaPredicted RBP11.34□□□□□ -0.59
VPS28-204ENST00000526054 CDHR5Q9HBB8 845 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.34□□□□□ -0.59
VPS28-204ENST00000526054 AAASQ9NRG9 546 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 GABBR1Q9UBS5 961 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 PCDHA12Q9UN75 941 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 ST3GAL5Q9UNP4 418 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 CEP131Q9UPN4 1083 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 PCDHB6Q9Y5E3 794 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 TBKBP1A7MCY6 615 aa11.33□□□□□ -0.6
VPS28-204ENST00000526054 DKC1O60832 514 aaKnown RBP eCLIP11.33□□□□□ -0.6
VPS28-204ENST00000526054 VTNP04004 478 aa11.33□□□□□ -0.6
VPS28-204ENST00000526054 ATP4AP20648 1035 aa11.33□□□□□ -0.6
VPS28-204ENST00000526054 NRIP1P48552 1158 aa11.33□□□□□ -0.6
VPS28-204ENST00000526054 CRYBB1P53674 252 aaPredicted RBP11.33□□□□□ -0.6
VPS28-204ENST00000526054 PTGDRQ13258 359 aa11.33□□□□□ -0.6
VPS28-204ENST00000526054 ADAM15Q13444 863 aa11.33□□□□□ -0.6
VPS28-204ENST00000526054 SLC24A5Q71RS6 500 aa11.33□□□□□ -0.6
VPS28-204ENST00000526054 FAM228AQ86W67 206 aa11.33□□□□□ -0.6
VPS28-204ENST00000526054 EFHBQ8N7U6 833 aa11.33□□□□□ -0.6
VPS28-204ENST00000526054 RAB34Q9BZG1 259 aa11.33□□□□□ -0.6
VPS28-204ENST00000526054 RGS18Q9NS28 235 aa11.33□□□□□ -0.6
VPS28-204ENST00000526054 PCDHB12Q9Y5F1 795 aa11.33□□□□□ -0.6
VPS28-204ENST00000526054 MAFBQ9Y5Q3 323 aaPredicted RBP11.33□□□□□ -0.6
VPS28-204ENST00000526054 WDFY4Q6ZS81 3184 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 C9IYK1 514 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 EML1O00423 815 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 HOXD11P31277 338 aaPredicted RBP11.32□□□□□ -0.6
VPS28-204ENST00000526054 PRPHP41219 470 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 CLCN3P51790 818 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 PSMC5P62195 406 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 PRKCEQ02156 737 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 UBE3AQ05086 875 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 SPIRE1Q08AE8 756 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 EPHA7Q15375 998 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 RBM23Q86U06 439 aaKnown RBP11.32□□□□□ -0.6
VPS28-204ENST00000526054 THNSL1Q8IYQ7 743 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 SMRP1Q8NCR6 262 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 ERMNQ8TAM6 284 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 MSLNLQ96KJ4 702 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 MAP7D2Q96T17 732 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 ATP6V0A4Q9HBG4 840 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 TLR9Q9NR96 1032 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 TMEM161AQ9NX61 479 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 HCSTQ9UBK5 93 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 DAXXQ9UER7 740 aaPredicted RBP11.32□□□□□ -0.6
VPS28-204ENST00000526054 MUTYHQ9UIF7 546 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 BARX2Q9UMQ3 279 aaPredicted RBP11.32□□□□□ -0.6
VPS28-204ENST00000526054 AKT3Q9Y243 479 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 PCDHGC5Q9Y5F6 944 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 MUC6Q6W4X9 2439 aa11.32□□□□□ -0.6
VPS28-204ENST00000526054 ARID2Q68CP9 1835 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 FSD2A1L4K1 749 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 POTEMA6NI47 508 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 MAGEB2O15479 319 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 GPR32O75388 356 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 FGF18O76093 207 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 GLP2RO95838 553 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 F13A1P00488 732 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 OATP04181 439 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 P4HBP07237 508 aaKnown RBP11.31□□□□□ -0.6
VPS28-204ENST00000526054 ZSCAN22P10073 491 aaPredicted RBP11.31□□□□□ -0.6
VPS28-204ENST00000526054 FGFR1P11362 822 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 LAG3P18627 525 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 TECP42680 631 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 QARSP47897 775 aaKnown RBP11.31□□□□□ -0.6
VPS28-204ENST00000526054 FXR2P51116 673 aaKnown RBP eCLIP11.31□□□□□ -0.6
VPS28-204ENST00000526054 ATP2C1P98194 919 aaPredicted RBP11.31□□□□□ -0.6
VPS28-204ENST00000526054 COASYQ13057 564 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 UGCGQ16739 394 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 FAM102BQ5T8I3 360 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 ARL6IP4Q66PJ3 421 aaKnown RBP11.31□□□□□ -0.6
VPS28-204ENST00000526054 HAUS3Q68CZ6 603 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 C4orf32Q8N8J7 132 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 COLGALT1Q8NBJ5 622 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 MICAL1Q8TDZ2 1067 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 SCLT1Q96NL6 688 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 TLE6Q9H808 572 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 NRBP2Q9NSY0 501 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 CLEC1BQ9P126 229 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 STK24Q9Y6E0 443 aa11.31□□□□□ -0.6
VPS28-204ENST00000526054 HOXA2O43364 376 aa11.3□□□□□ -0.6
VPS28-204ENST00000526054 ZNF862O60290 1169 aa11.3□□□□□ -0.6
VPS28-204ENST00000526054 EYA4O95677 639 aa11.3□□□□□ -0.6
VPS28-204ENST00000526054 TMOD1P28289 359 aa11.3□□□□□ -0.6
VPS28-204ENST00000526054 SF3A1Q15459 793 aaKnown RBP11.3□□□□□ -0.6
VPS28-204ENST00000526054 XKR3Q5GH77 459 aa11.3□□□□□ -0.6
VPS28-204ENST00000526054 HERC4Q5GLZ8 1057 aaPredicted RBP11.3□□□□□ -0.6
VPS28-204ENST00000526054 EFCAB12Q6NXP0 572 aa11.3□□□□□ -0.6
VPS28-204ENST00000526054 DTHD1Q6ZMT9 781 aa11.3□□□□□ -0.6
VPS28-204ENST00000526054 RNF135Q8IUD6 432 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms