RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 SH2B2O14492 632 aaPredicted RBP13.18□□□□□ -0.3
SDCBP-211ENST00000523441 CTSAP10619 480 aa13.18□□□□□ -0.3
SDCBP-211ENST00000523441 EIF4BP23588 611 aaKnown RBP13.18□□□□□ -0.3
SDCBP-211ENST00000523441 PUM1Q14671 1186 aaKnown RBP eCLIP13.18□□□□□ -0.3
SDCBP-211ENST00000523441 LETM2Q2VYF4 491 aa13.18□□□□□ -0.3
SDCBP-211ENST00000523441 TWF2Q6IBS0 349 aaKnown RBP13.18□□□□□ -0.3
SDCBP-211ENST00000523441 TYW1BQ6NUM6 668 aa13.18□□□□□ -0.3
SDCBP-211ENST00000523441 BBXQ8WY36 941 aaPredicted RBP13.18□□□□□ -0.3
SDCBP-211ENST00000523441 IGSF21Q96ID5 467 aa13.18□□□□□ -0.3
SDCBP-211ENST00000523441 MAP3K14Q99558 947 aa13.18□□□□□ -0.3
SDCBP-211ENST00000523441 ZNF577Q9BSK1 485 aa13.18□□□□□ -0.3
SDCBP-211ENST00000523441 RNF39Q9H2S5 420 aa13.18□□□□□ -0.3
SDCBP-211ENST00000523441 SLC12A7Q9Y666 1083 aa13.18□□□□□ -0.3
SDCBP-211ENST00000523441 SMCO2A6NFE2 343 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 MEIS3P2A8K0S8 358 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 FAM86B1E9PN63 330 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 IPO5O00410 1097 aaKnown RBP13.17□□□□□ -0.3
SDCBP-211ENST00000523441 MEIS1O00470 390 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 N4BP1O75113 896 aaKnown RBP13.17□□□□□ -0.3
SDCBP-211ENST00000523441 FAM86B2P0C5J1 330 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 SPATA31D3P0C874 917 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 GSPT1P15170 499 aaKnown RBP13.17□□□□□ -0.3
SDCBP-211ENST00000523441 TMOD1P28289 359 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 SMARCA1P28370 1054 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 SLC11A1P49279 550 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 SPATA31D4Q6ZUB0 917 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 TMTC3Q6ZXV5 915 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 GPR152Q8TDT2 470 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 RUFY2Q8WXA3 655 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 KLHL5Q96PQ7 755 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 ADAMTS10Q9H324 1103 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 NRDE2Q9H7Z3 1164 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 RIC8AQ9NPQ8 531 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 TBC1D13Q9NVG8 400 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 RBM8AQ9Y5S9 174 aaKnown RBP13.17□□□□□ -0.3
SDCBP-211ENST00000523441 COL4A3Q01955 1670 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 MIA3Q5JRA6 1907 aa13.17□□□□□ -0.3
SDCBP-211ENST00000523441 A0A0U1RQF3 1178 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 CHMP2AO43633 222 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 LRRN2O75325 713 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 PSAPP07602 524 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 GALTP07902 379 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 CNPP09543 421 aaKnown RBP13.16□□□□□ -0.3
SDCBP-211ENST00000523441 SP9P0CG40 484 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 CALM1P0DP23 149 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 CALM2P0DP24 149 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 CALM3P0DP25 149 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 DARSP14868 501 aaKnown RBP13.16□□□□□ -0.3
SDCBP-211ENST00000523441 MCM5P33992 734 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 GPC3P51654 580 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 AK2P54819 239 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 PTPN14Q15678 1187 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 DDX53Q86TM3 631 aaKnown RBP13.16□□□□□ -0.3
SDCBP-211ENST00000523441 ZNF598Q86UK7 904 aaKnown RBP13.16□□□□□ -0.3
SDCBP-211ENST00000523441 FANCBQ8NB91 859 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 RUBCNQ92622 972 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 SH2D3AQ9BRG2 576 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 VN1R3Q9BXE9 311 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 EMILIN2Q9BXX0 1053 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 FOXQ1Q9C009 403 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 MAN1C1Q9NR34 630 aa13.16□□□□□ -0.3
SDCBP-211ENST00000523441 NAP1L2Q9ULW6 460 aaPredicted RBP13.16□□□□□ -0.3
SDCBP-211ENST00000523441 PIN4Q9Y237 131 aaKnown RBP13.16□□□□□ -0.3
SDCBP-211ENST00000523441 CEP250Q9BV73 2442 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 CCDC195A0A1B0GUA6 201 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 POTEMA6NI47 508 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 MAGEB2O15479 319 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 DHX15O43143 795 aaKnown RBP13.15□□□□□ -0.3
SDCBP-211ENST00000523441 B4GALT3O60512 393 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 RFPL2O75678 378 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 FOSP01100 380 aaPredicted RBP13.15□□□□□ -0.3
SDCBP-211ENST00000523441 CHMLP26374 656 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 SREBF1P36956 1147 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 PHKA2P46019 1235 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 CLCN4P51793 760 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 DRP2Q13474 957 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 GIT2Q14161 759 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 NOMO2Q5JPE7 1267 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 TTC22Q5TAA0 569 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 ZC3H14Q6PJT7 736 aaKnown RBP13.15□□□□□ -0.3
SDCBP-211ENST00000523441 POTEGQ6S5H5 508 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 GLB1LQ6UWU2 654 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 GET4Q7L5D6 327 aaPredicted RBP13.15□□□□□ -0.3
SDCBP-211ENST00000523441 PPFIBP1Q86W92 1011 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 ZNF280BQ86YH2 543 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 GLYCTKQ8IVS8 523 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 MYADMQ96S97 322 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 PIDD1Q9HB75 910 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 DACT1Q9NYF0 836 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 IGSF9Q9P2J2 1179 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 NCDNQ9UBB6 729 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 CEP131Q9UPN4 1083 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 SIT1Q9Y3P8 196 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 MAFBQ9Y5Q3 323 aaPredicted RBP13.15□□□□□ -0.3
SDCBP-211ENST00000523441 V9GY48 417 aaPredicted RBP13.15□□□□□ -0.3
SDCBP-211ENST00000523441 FANCMQ8IYD8 2048 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 EPG5Q9HCE0 2579 aa13.15□□□□□ -0.3
SDCBP-211ENST00000523441 CNTNAP5Q8WYK1 1306 aa13.14□□□□□ -0.31
SDCBP-211ENST00000523441 MYH15Q9Y2K3 1946 aa13.14□□□□□ -0.31
SDCBP-211ENST00000523441 TMEM150BA6NC51 233 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms