RNA–Protein interactions for RNA: ENST00000520234.1

HMGB1P41-201, Transcript of high mobility group box 1 pseudogene 41, humanhuman

BASIC

Gene HMGB1P41, Length 440 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P41-201ENST00000520234 FSCN1Q16658 493 aaKnown RBP4.49□□□□□ -1.69
HMGB1P41-201ENST00000520234 DGKDQ16760 1214 aa4.49□□□□□ -1.69
HMGB1P41-201ENST00000520234 CCDC178Q5BJE1 867 aa4.49□□□□□ -1.69
HMGB1P41-201ENST00000520234 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.49□□□□□ -1.69
HMGB1P41-201ENST00000520234 BORAQ6PGQ7 559 aa4.49□□□□□ -1.69
HMGB1P41-201ENST00000520234 RPUSD2Q8IZ73 545 aaKnown RBP4.49□□□□□ -1.69
HMGB1P41-201ENST00000520234 CNTD1Q8N815 330 aa4.49□□□□□ -1.69
HMGB1P41-201ENST00000520234 OR5AN1Q8NGI8 311 aa4.49□□□□□ -1.69
HMGB1P41-201ENST00000520234 COG1Q8WTW3 980 aa4.49□□□□□ -1.69
HMGB1P41-201ENST00000520234 NAF1Q96HR8 494 aaKnown RBP4.49□□□□□ -1.69
HMGB1P41-201ENST00000520234 CARD11Q9BXL7 1154 aa4.49□□□□□ -1.69
HMGB1P41-201ENST00000520234 SEMA4AQ9H3S1 761 aa4.49□□□□□ -1.69
HMGB1P41-201ENST00000520234 MTG2Q9H4K7 406 aa4.49□□□□□ -1.69
HMGB1P41-201ENST00000520234 SAE1Q9UBE0 346 aaPredicted RBP4.49□□□□□ -1.69
HMGB1P41-201ENST00000520234 VWA7Q9Y334 891 aa4.49□□□□□ -1.69
HMGB1P41-201ENST00000520234 WASHC2AQ641Q2 1341 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 PRSS38A1L453 326 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 NOBOXO60393 691 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 OPHN1O60890 802 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 HMGCRP04035 888 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 PFKMP08237 780 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 ENPP1P22413 925 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 ADCY8P40145 1251 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 ERVK-21P61565 698 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 KLF1Q13351 362 aaPredicted RBP4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 USP10Q14694 798 aaKnown RBP4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 PDCD1Q15116 288 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 MAN2A1Q16706 1144 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 UGT8Q16880 541 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 SYDE2Q5VT97 1194 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 TRIM68Q6AZZ1 485 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 UNQ6494/PRO21346Q6UXR6 183 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 LMBR1Q8WVP7 490 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 MBD6Q96DN6 1003 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 RAX2Q96IS3 184 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 HIST1H2AHQ96KK5 128 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 C8orf49Q96NF6 230 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 ORAI2Q96SN7 254 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 RBM15Q96T37 977 aaKnown RBP eCLIP4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 HIST1H2AJQ99878 128 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 ANO3Q9BYT9 981 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 HAPLN2Q9GZV7 340 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 MS4A5Q9H3V2 200 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 VTA1Q9NP79 307 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 C14orf119Q9NWQ9 140 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 SPEF1Q9Y4P9 236 aa4.48□□□□□ -1.69
HMGB1P41-201ENST00000520234 WASHC2CQ9Y4E1 1318 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 LCHNA4D1U4 455 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 NRP2O60462 931 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 CFBP00751 764 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 MTHFD2P13995 350 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 CSF2RBP32927 897 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 MEOX1P50221 254 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 KCNQ1P51787 676 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 EVA1CP58658 441 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 EXOSC10Q01780 885 aaKnown RBP4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 ITKQ08881 620 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 FAM50AQ14320 339 aaKnown RBP4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 ZMAT1Q5H9K5 638 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 ZBTB41Q5SVQ8 909 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 NT5DC1Q5TFE4 455 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 CCDC62Q6P9F0 684 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 PLEKHH3Q7Z736 793 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 RALYLQ86SE5 291 aaKnown RBP4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 RTKN2Q8IZC4 609 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 LGI4Q8N135 537 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 CDYL2Q8N8U2 506 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 LPPQ93052 612 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 GFM2Q969S9 779 aaKnown RBP4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 DYDC2Q96IM9 177 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 NOL10Q9BSC4 688 aaKnown RBP4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 OSBPL6Q9BZF3 934 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 POLR3BQ9NW08 1133 aaPredicted RBP4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 DDX56Q9NY93 547 aaKnown RBP4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 CDC42EP3Q9UKI2 254 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 ZDHHC9Q9Y397 364 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 PCDHB6Q9Y5E3 794 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 PPP2R3BQ9Y5P8 575 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 TNFRSF18Q9Y5U5 241 aa4.47□□□□□ -1.69
HMGB1P41-201ENST00000520234 H2AFYO75367 372 aaKnown RBP4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 KATNA1O75449 491 aa4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 PCDH8O95206 1070 aa4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 XPAP23025 273 aaPredicted RBP4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 SCAND1P57086 179 aa4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 MRPS9P82933 396 aaKnown RBP4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 MTMR1Q13613 665 aa4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 SURF1Q15526 300 aa4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 INAVAQ3KP66 663 aa4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 KLHDC10Q6PID8 442 aa4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 KBTBD2Q8IY47 623 aa4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 BCL6BQ8N143 479 aaPredicted RBP4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 OR14C36Q8NHC7 312 aa4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 SSH1Q8WYL5 1049 aa4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 MTMR8Q96EF0 704 aa4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 PAWRQ96IZ0 340 aaKnown RBP4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 WDR92Q96MX6 357 aa4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 CEP89Q96ST8 783 aa4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 TRIM8Q9BZR9 551 aa4.46□□□□□ -1.7
HMGB1P41-201ENST00000520234 C11orf21Q9P2W6 132 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms