RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	CEP55	Q53EZ4	464 aa		11.92	□□□□□ -0.5
CLDND1-231	ENST00000515620	SWSAP1	Q6NVH7	229 aa		11.92	□□□□□ -0.5
CLDND1-231	ENST00000515620	MIS18BP1	Q6P0N0	1132 aa		11.92	□□□□□ -0.5
CLDND1-231	ENST00000515620	PLEKHM2	Q8IWE5	1019 aa		11.92	□□□□□ -0.5
CLDND1-231	ENST00000515620	SLC44A3	Q8N4M1	653 aa		11.92	□□□□□ -0.5
CLDND1-231	ENST00000515620	LRRC71	Q8N4P6	559 aa		11.92	□□□□□ -0.5
CLDND1-231	ENST00000515620	NCOA7	Q8NI08	942 aa		11.92	□□□□□ -0.5
CLDND1-231	ENST00000515620	KLHL5	Q96PQ7	755 aa		11.92	□□□□□ -0.5
CLDND1-231	ENST00000515620	MAP3K14	Q99558	947 aa		11.92	□□□□□ -0.5
CLDND1-231	ENST00000515620	VN1R3	Q9BXE9	311 aa		11.92	□□□□□ -0.5
CLDND1-231	ENST00000515620	EMILIN2	Q9BXX0	1053 aa		11.92	□□□□□ -0.5
CLDND1-231	ENST00000515620	FOXQ1	Q9C009	403 aa		11.92	□□□□□ -0.5
CLDND1-231	ENST00000515620	GBP3	Q9H0R5	595 aa		11.92	□□□□□ -0.5
CLDND1-231	ENST00000515620	ADAMTS10	Q9H324	1103 aa		11.92	□□□□□ -0.5
CLDND1-231	ENST00000515620	CDV3	Q9UKY7	258 aa	Known RBP	11.92	□□□□□ -0.5
CLDND1-231	ENST00000515620	INPP5F	Q9Y2H2	1132 aa		11.92	□□□□□ -0.5
CLDND1-231	ENST00000515620	EVPL	Q92817	2033 aa		11.92	□□□□□ -0.5
CLDND1-231	ENST00000515620	CHD8	Q9HCK8	2581 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	FANCM	Q8IYD8	2048 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620		E7EWF7	191 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	CNP	P09543	421 aa	Known RBP	11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	GLUL	P15104	373 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	RXRA	P19793	462 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	SDHB	P21912	280 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	SMARCA1	P28370	1054 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	GNAQ	P50148	359 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	ATXN1	P54253	815 aa	Known RBP	11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	RNASEL	Q05823	741 aa	Known RBP	11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	HDAC1	Q13547	482 aa	Predicted RBP	11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	VARS2	Q5ST30	1063 aa	Known RBP	11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	KIAA0319	Q5VV43	1072 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	B4GALNT3	Q6L9W6	998 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	PHLDB3	Q6NSJ2	640 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	PJA1	Q8NG27	643 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	IGDCC4	Q8TDY8	1250 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	BBX	Q8WY36	941 aa	Predicted RBP	11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	LPP	Q93052	612 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	MYADM	Q96S97	322 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	NRDE2	Q9H7Z3	1164 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	LY9	Q9HBG7	655 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	MAN1C1	Q9NR34	630 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	TBC1D13	Q9NVG8	400 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	DACT1	Q9NYF0	836 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	DNAJB4	Q9UDY4	337 aa		11.91	□□□□□ -0.5
CLDND1-231	ENST00000515620	USP24	Q9UPU5	2620 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	DCDC2B	A2VCK2	349 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	MEIS1	O00470	390 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	SPTLC1	O15269	473 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	LRRN2	O75325	713 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	GALT	P07902	379 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	MYB	P10242	640 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	DARS	P14868	501 aa	Known RBP	11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	SLC11A1	P49279	550 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	GPC3	P51654	580 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	NOMO2	Q5JPE7	1267 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	EFCAB12	Q6NXP0	572 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	DCLRE1A	Q6PJP8	1040 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	GLB1L	Q6UWU2	654 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	NFXL1	Q6ZNB6	911 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	RAB11FIP4	Q86YS3	637 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	MAML2	Q8IZL2	1156 aa	Predicted RBP	11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	CCDC82	Q8N4S0	544 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	CMAS	Q8NFW8	434 aa	Predicted RBP	11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	STAM	Q92783	540 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	ANO3	Q9BYT9	981 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	OSBPL3	Q9H4L5	887 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	WDR6	Q9NNW5	1121 aa	Known RBP	11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	EPS15L1	Q9UBC2	864 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	CEP131	Q9UPN4	1083 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	CHD6	Q8TD26	2715 aa		11.9	□□□□□ -0.5
CLDND1-231	ENST00000515620	CCDC195	A0A1B0GUA6	201 aa		11.89	□□□□□ -0.51
CLDND1-231	ENST00000515620	CARNS1	A5YM72	827 aa		11.89	□□□□□ -0.51
CLDND1-231	ENST00000515620	INPPL1	O15357	1258 aa		11.89	□□□□□ -0.51
CLDND1-231	ENST00000515620	MAGEB2	O15479	319 aa		11.89	□□□□□ -0.51
CLDND1-231	ENST00000515620	B4GALT3	O60512	393 aa		11.89	□□□□□ -0.51
CLDND1-231	ENST00000515620	CSDE1	O75534	798 aa	Known RBP	11.89	□□□□□ -0.51
CLDND1-231	ENST00000515620	TMOD1	P28289	359 aa		11.89	□□□□□ -0.51
CLDND1-231	ENST00000515620	ZNF76	P36508	570 aa		11.89	□□□□□ -0.51
CLDND1-231	ENST00000515620	PHKA2	P46019	1235 aa		11.89	□□□□□ -0.51
CLDND1-231	ENST00000515620	LMNB2	Q03252	620 aa		11.89	□□□□□ -0.51
CLDND1-231	ENST00000515620	PTH1R	Q03431	593 aa		11.89	□□□□□ -0.51
CLDND1-231	ENST00000515620	MB21D2	Q8IYB1	491 aa	Predicted RBP	11.89	□□□□□ -0.51
CLDND1-231	ENST00000515620	GPR161	Q8N6U8	529 aa	Known RBP	11.89	□□□□□ -0.51
CLDND1-231	ENST00000515620	LINC01465	Q8N7H1	131 aa		11.89	□□□□□ -0.51
CLDND1-231	ENST00000515620	ST13P5	Q8NFI4	369 aa	Predicted RBP	11.89	□□□□□ -0.51
CLDND1-231	ENST00000515620	NLRP7	Q8WX94	980 aa		11.89	□□□□□ -0.51
CLDND1-231	ENST00000515620	SPATA6	Q9NWH7	488 aa	Predicted RBP	11.89	□□□□□ -0.51
CLDND1-231	ENST00000515620	TCEAL9	Q9UHQ7	104 aa		11.89	□□□□□ -0.51
CLDND1-231	ENST00000515620	SMG5	Q9UPR3	1016 aa	Known RBP	11.89	□□□□□ -0.51
CLDND1-231	ENST00000515620	MEIS3P2	A8K0S8	358 aa		11.88	□□□□□ -0.51
CLDND1-231	ENST00000515620	IPO5	O00410	1097 aa	Known RBP	11.88	□□□□□ -0.51
CLDND1-231	ENST00000515620	C2CD2L	O14523	706 aa		11.88	□□□□□ -0.51
CLDND1-231	ENST00000515620	DHX15	O43143	795 aa	Known RBP	11.88	□□□□□ -0.51
CLDND1-231	ENST00000515620	LAMTOR5	O43504	91 aa		11.88	□□□□□ -0.51
CLDND1-231	ENST00000515620	RFPL2	O75678	378 aa		11.88	□□□□□ -0.51
CLDND1-231	ENST00000515620	SREBF1	P36956	1147 aa		11.88	□□□□□ -0.51
CLDND1-231	ENST00000515620	AK2	P54819	239 aa		11.88	□□□□□ -0.51
CLDND1-231	ENST00000515620	NAPA	P54920	295 aa		11.88	□□□□□ -0.51
CLDND1-231	ENST00000515620	WWC2	Q6AWC2	1192 aa		11.88	□□□□□ -0.51
CLDND1-231	ENST00000515620	TWF2	Q6IBS0	349 aa	Known RBP	11.88	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms