RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 FBXL5Q9UKA1 691 aa8.1□□□□□ -1.11
CLIP1-205ENST00000514271 ASB3Q9Y575 518 aa8.1□□□□□ -1.11
CLIP1-205ENST00000514271 HMGB1P1B2RPK0 211 aaPredicted RBP8.1□□□□□ -1.11
CLIP1-205ENST00000514271 ENC1O14682 589 aa8.1□□□□□ -1.11
CLIP1-205ENST00000514271 SMNDC1O75940 238 aaKnown RBP eCLIP8.1□□□□□ -1.11
CLIP1-205ENST00000514271 HSPA1AP0DMV8 641 aaKnown RBP8.1□□□□□ -1.11
CLIP1-205ENST00000514271 HSPA1BP0DMV9 641 aaKnown RBP8.1□□□□□ -1.11
CLIP1-205ENST00000514271 PDHBP11177 359 aa8.1□□□□□ -1.11
CLIP1-205ENST00000514271 BDNFP23560 247 aa8.1□□□□□ -1.11
CLIP1-205ENST00000514271 ELF1P32519 619 aa8.1□□□□□ -1.11
CLIP1-205ENST00000514271 GCKP35557 465 aa8.1□□□□□ -1.11
CLIP1-205ENST00000514271 MMP13P45452 471 aa8.1□□□□□ -1.11
CLIP1-205ENST00000514271 ZKSCAN8Q15776 578 aaPredicted RBP8.1□□□□□ -1.11
CLIP1-205ENST00000514271 KIAA0753Q2KHM9 967 aa8.1□□□□□ -1.11
CLIP1-205ENST00000514271 SYDE2Q5VT97 1194 aa8.1□□□□□ -1.11
CLIP1-205ENST00000514271 NLRP14Q86W24 1093 aa8.1□□□□□ -1.11
CLIP1-205ENST00000514271 SRBD1Q8N5C6 995 aaKnown RBP8.1□□□□□ -1.11
CLIP1-205ENST00000514271 NELFBQ8WX92 580 aa8.1□□□□□ -1.11
CLIP1-205ENST00000514271 COA7Q96BR5 231 aa8.1□□□□□ -1.11
CLIP1-205ENST00000514271 TPX2Q9ULW0 747 aaKnown RBP8.1□□□□□ -1.11
CLIP1-205ENST00000514271 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.1□□□□□ -1.11
CLIP1-205ENST00000514271 GDAQ9Y2T3 454 aa8.1□□□□□ -1.11
CLIP1-205ENST00000514271 SLC12A7Q9Y666 1083 aa8.1□□□□□ -1.11
CLIP1-205ENST00000514271 PALM3A6NDB9 673 aaPredicted RBP8.09□□□□□ -1.11
CLIP1-205ENST00000514271 TRIM49BA6NDI0 452 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 CTU1Q7Z7A3 348 aaKnown RBP8.09□□□□□ -1.11
CLIP1-205ENST00000514271 MCF2L2Q86YR7 1114 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 ZNF654Q8IZM8 581 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 BANK1Q8NDB2 785 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 ACER1Q8TDN7 264 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 AZIN2Q96A70 460 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 BORCS6Q96GS4 357 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 PYM1Q9BRP8 204 aaKnown RBP8.09□□□□□ -1.11
CLIP1-205ENST00000514271 TEX13BQ9BXU2 312 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 ACTR5Q9H9F9 607 aaPredicted RBP8.09□□□□□ -1.11
CLIP1-205ENST00000514271 SLC38A10Q9HBR0 1119 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 CD248Q9HCU0 757 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 CEP131Q9UPN4 1083 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 SPDYE16A6NNV3 312 aaPredicted RBP8.09□□□□□ -1.11
CLIP1-205ENST00000514271 XRCC5P13010 732 aaKnown RBP8.09□□□□□ -1.11
CLIP1-205ENST00000514271 CCNB1P14635 433 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 KRT9P35527 623 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 ERVK-9P63128 1117 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 ELF3P78545 371 aaPredicted RBP8.09□□□□□ -1.11
CLIP1-205ENST00000514271 ORC2Q13416 577 aaPredicted RBP8.09□□□□□ -1.11
CLIP1-205ENST00000514271 FAM47AQ5JRC9 791 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 CYB5D1Q6P9G0 228 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 TRIM58Q8NG06 486 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 ZNF570Q96NI8 536 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 PTPN18Q99952 460 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 CUEDC2Q9H467 287 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 BLOC1S4Q9NUP1 217 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 USP20Q9Y2K6 914 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 PCDHA13Q9Y5I0 950 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 COL11A1P12107 1806 aaPredicted RBP8.09□□□□□ -1.11
CLIP1-205ENST00000514271 A0A1W2PRG0 241 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 ASAP2O43150 1006 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 FLOT1O75955 427 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 HADHBP55084 474 aaKnown RBP8.09□□□□□ -1.11
CLIP1-205ENST00000514271 JAG1P78504 1218 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 SETDB1Q15047 1291 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 TMEM119Q4V9L6 283 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 ANKRD40Q6AI12 368 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 NFXL1Q6ZNB6 911 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 ZNF483Q8TF39 744 aaPredicted RBP8.09□□□□□ -1.11
CLIP1-205ENST00000514271 CRYGNQ8WXF5 182 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 CALR3Q96L12 384 aaKnown RBP8.09□□□□□ -1.11
CLIP1-205ENST00000514271 RIOX1Q9H6W3 641 aa8.09□□□□□ -1.11
CLIP1-205ENST00000514271 SCAF8Q9UPN6 1271 aaKnown RBP8.09□□□□□ -1.11
CLIP1-205ENST00000514271 MRPL11Q9Y3B7 192 aaKnown RBP8.09□□□□□ -1.11
CLIP1-205ENST00000514271 PRDM1O75626 825 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 ICAM1P05362 532 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 CARSP49589 748 aaKnown RBP8.08□□□□□ -1.12
CLIP1-205ENST00000514271 CRHR2Q13324 411 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 MTA1Q13330 715 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 GALNT17Q6IS24 598 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 CGB2Q6NT52 195 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 B4GALNT4Q76KP1 1039 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 BCAS4Q8TDM0 211 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 PXYLP1Q8TE99 480 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 WHAMMQ8TF30 809 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 MYL10Q9BUA6 226 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 EHMT1Q9H9B1 1298 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 HOOK1Q9UJC3 728 aaKnown RBP8.08□□□□□ -1.12
CLIP1-205ENST00000514271 VWA5AO00534 786 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 PPP1R12AO14974 1030 aaPredicted RBP8.08□□□□□ -1.12
CLIP1-205ENST00000514271 WFS1O76024 890 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 KRT14P02533 472 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 ABL2P42684 1182 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 GNGT1P63211 74 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 KRT83P78385 493 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 ATP2B2Q01814 1243 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 DCAF12L1Q5VU92 463 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 PDXDC1Q6P996 788 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 DLK2Q6UY11 383 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 GOLGA6L1Q8N7Z2 621 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 USP38Q8NB14 1042 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 SLAIN1Q8ND83 568 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 REPS2Q8NFH8 660 aa8.08□□□□□ -1.12
CLIP1-205ENST00000514271 FRMPD4Q14CM0 1322 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms