RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 CPB2Q96IY4 423 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 AGXT2Q9BYV1 514 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 NRBP2Q9NSY0 501 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 WRAP73Q9P2S5 460 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 CLIC4Q9Y696 253 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 IGLV3-22A0A075B6J6 115 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 NBNO60934 754 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 CABYRO75952 493 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 F2P00734 622 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 SETSIPP0DME0 302 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 SELPP16109 830 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 CASP1P29466 404 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 KARSQ15046 597 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 CCSAPQ6IQ19 270 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 USP49Q70CQ1 688 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 ABI1Q8IZP0 508 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 ITFG2Q969R8 447 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 ADAM2Q99965 735 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 EIF2AK1Q9BQI3 630 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 EVPLQ92817 2033 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 MROH7Q68CQ1 1323 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 WDFY4Q6ZS81 3184 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 ARHGEF35A5YM69 484 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 FGFR1P11362 822 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 RGS19P49795 217 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 RNASELQ05823 741 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 NPY5RQ15761 445 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 TMEM240Q5SV17 173 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 ZNF697Q5TEC3 545 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 DTHD1Q6ZMT9 781 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 ZBTB33Q86T24 672 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 TRIML1Q8N9V2 468 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 DHX38Q92620 1227 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 MTA3Q9BTC8 594 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 GLT8D2Q9H1C3 349 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 TBC1D22BQ9NU19 505 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 RIF1Q5UIP0 2472 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 FAM170AA1A519 330 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 PIK3CDO00329 1044 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 TMOD1P28289 359 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 AFMP43652 599 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 SPAG1Q07617 926 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 PAK2Q13177 524 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 PPIGQ13427 754 aaKnown RBP eCLIP8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 IKBKEQ14164 716 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 GRIN2CQ14957 1233 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 EXOC8Q8IYI6 725 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 GDPD5Q8WTR4 605 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 PRIMPOLQ96LW4 560 aa8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 MTIF3Q9H2K0 278 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 ALG13Q9NP73 1137 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 SUCLA2Q9P2R7 463 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-219ENST00000514096 PLXNA1Q9UIW2 1896 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 GOLGA6L4A6NEF3 574 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 RIOK3O14730 519 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 OR52Z1P0C646 297 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 ATP4AP20648 1035 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 YWHABP31946 246 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 QARSP47897 775 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 DNM2P50570 870 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 DNM1Q05193 864 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 KANK3Q6NY19 840 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 TMEM40Q8WWA1 233 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 HAS1Q92839 578 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 BICD1Q96G01 975 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 GDF15Q99988 308 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 PARP2Q9UGN5 583 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 MSRAQ9UJ68 235 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 TBX21Q9UL17 535 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 GDAQ9Y2T3 454 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 PRG3Q9Y2Y8 225 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 REV3LO60673 3130 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 STX6O43752 255 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 ACTN1P12814 892 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 FOSL2P15408 326 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 GCKP35557 465 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 BTG3Q14201 252 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 MBTPS1Q14703 1052 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 SLC17A8Q8NDX2 589 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 EPSTI1Q96J88 318 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 TSEN34Q9BSV6 310 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 PBX4Q9BYU1 374 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 ANKFY1Q9P2R3 1169 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 PADI3Q9ULW8 664 aa8.69□□□□□ -1.02
LIMCH1-219ENST00000514096 AP1G2O75843 785 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 OATP04181 439 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 LMAN1P49257 510 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 FXR1P51114 621 aaKnown RBP eCLIP8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 GLRA4Q5JXX5 417 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 KRT79Q5XKE5 535 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 C16orf87Q6PH81 154 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 UBE2Q1Q7Z7E8 422 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 GIMAP8Q8ND71 665 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 PRPF31Q8WWY3 499 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 LENG9Q96B70 501 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 TIFAQ96CG3 184 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 PCDHGC5Q9Y5F6 944 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 TBKBP1A7MCY6 615 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 MEIS3P2A8K0S8 358 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms