RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 FAM196BA6NMK8 535 aa10.42□□□□□ -0.74
VCAN-210ENST00000513960 TCP11X1B4DZS4 312 aa10.42□□□□□ -0.74
VCAN-210ENST00000513960 F8VZ95 297 aa10.42□□□□□ -0.74
VCAN-210ENST00000513960 CETN3O15182 167 aa10.42□□□□□ -0.74
VCAN-210ENST00000513960 GFPT2O94808 682 aa10.42□□□□□ -0.74
VCAN-210ENST00000513960 ACSL3O95573 720 aa10.42□□□□□ -0.74
VCAN-210ENST00000513960 PLA2G4BP0C869 781 aa10.42□□□□□ -0.74
VCAN-210ENST00000513960 EEF2P13639 858 aaKnown RBP10.42□□□□□ -0.74
VCAN-210ENST00000513960 CLK2P49760 499 aaKnown RBP10.42□□□□□ -0.74
VCAN-210ENST00000513960 ALDH5A1P51649 535 aaPredicted RBP10.42□□□□□ -0.74
VCAN-210ENST00000513960 PMS2P54278 862 aa10.42□□□□□ -0.74
VCAN-210ENST00000513960 RBBP5Q15291 538 aaKnown RBP10.42□□□□□ -0.74
VCAN-210ENST00000513960 MREGQ8N565 214 aa10.42□□□□□ -0.74
VCAN-210ENST00000513960 CCT6BQ92526 530 aa10.42□□□□□ -0.74
VCAN-210ENST00000513960 OSBPL1AQ9BXW6 950 aa10.42□□□□□ -0.74
VCAN-210ENST00000513960 ANO3Q9BYT9 981 aa10.42□□□□□ -0.74
VCAN-210ENST00000513960 FAM129AQ9BZQ8 928 aa10.42□□□□□ -0.74
VCAN-210ENST00000513960 SLC12A6Q9UHW9 1150 aa10.42□□□□□ -0.74
VCAN-210ENST00000513960 TRIM33Q9UPN9 1127 aa10.42□□□□□ -0.74
VCAN-210ENST00000513960 PCDHB13Q9Y5F0 798 aa10.42□□□□□ -0.74
VCAN-210ENST00000513960 EDIL3O43854 480 aa10.42□□□□□ -0.74
VCAN-210ENST00000513960 THEMIS2Q5TEJ8 643 aa10.42□□□□□ -0.74
VCAN-210ENST00000513960 BZW1Q7L1Q6 419 aaKnown RBP10.42□□□□□ -0.74
VCAN-210ENST00000513960 EPS8L3Q8TE67 593 aaKnown RBP10.42□□□□□ -0.74
VCAN-210ENST00000513960 CALR3Q96L12 384 aaKnown RBP10.42□□□□□ -0.74
VCAN-210ENST00000513960 QTRT2Q9H974 415 aaKnown RBP10.42□□□□□ -0.74
VCAN-210ENST00000513960 PI4KBQ9UBF8 816 aa10.42□□□□□ -0.74
VCAN-210ENST00000513960 NPHP3-ACAD11A0A0J9YXS1 232 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 SUN1O94901 812 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 SLURP2P0DP57 97 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 SLC9A1P19634 815 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 USP11P51784 963 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 XRCC4Q13426 336 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 SLC29A2Q14542 456 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 ECM1Q16610 540 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 ARHGAP44Q17R89 818 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 PODNQ7Z5L7 613 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 TMC3Q7Z5M5 1100 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 ERICH1Q86X53 443 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 CCDC105Q8IYK2 499 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 SLFN12Q8IYM2 578 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 ERMNQ8TAM6 284 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 RNF217Q8TC41 542 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 DCAF4Q8WV16 495 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 CDK5RAP2Q96SN8 1893 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 KDM4CQ9H3R0 1056 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 TMOD4Q9NZQ9 345 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 POTEB3A0JP26 581 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 POTECB2RU33 542 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 PJA2O43164 708 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 TLR2O60603 784 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 GNA14O95837 355 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 NR2F2P24468 414 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 HNRNPH3P31942 346 aaKnown RBP10.41□□□□□ -0.74
VCAN-210ENST00000513960 STX2P32856 288 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 ZNF449Q6P9G9 518 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 POTEBQ6S5H4 581 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 A0A1W2PRG0 241 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 RASGRF2O14827 1237 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 NQO1P15559 274 aaKnown RBP10.41□□□□□ -0.74
VCAN-210ENST00000513960 ICA1Q05084 483 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 KCNMA1Q12791 1236 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 ZFYVE27Q5T4F4 411 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 LRRC55Q6ZSA7 311 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 KRT27Q7Z3Y8 459 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 ZFPM1Q8IX07 1006 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 DNAJC19Q96DA6 116 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 DNAJC8O75937 253 aaPredicted RBP10.41□□□□□ -0.74
VCAN-210ENST00000513960 KCNH2Q12809 1159 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 PRR16Q569H4 304 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 GJB7Q6PEY0 223 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 TAOK1Q7L7X3 1001 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 LMNTD2Q8IXW0 634 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 MASTLQ96GX5 879 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 SH3GL3Q99963 347 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 AMNQ9BXJ7 453 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 EDEM3Q9BZQ6 932 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 TRIM7Q9C029 511 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 ETNK1Q9HBU6 452 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.41□□□□□ -0.74
VCAN-210ENST00000513960 NYAP2Q9P242 653 aa10.41□□□□□ -0.74
VCAN-210ENST00000513960 CHORDC1Q9UHD1 332 aaPredicted RBP10.41□□□□□ -0.74
VCAN-210ENST00000513960 CCDC188H7C350 402 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 POLE2P56282 527 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 AP3B2Q13367 1082 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 EXOC3L4Q17RC7 722 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 USH1GQ495M9 461 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 HGSNATQ68CP4 663 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 CEP63Q96MT8 703 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 ZDHHC15Q96MV8 337 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 TSC22D3Q99576 134 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 DDX23Q9BUQ8 820 aaKnown RBP10.4□□□□□ -0.74
VCAN-210ENST00000513960 TAOK3Q9H2K8 898 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 EMILIN3Q9NT22 766 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 ZNF219Q9P2Y4 722 aaPredicted RBP10.4□□□□□ -0.74
VCAN-210ENST00000513960 BCS1LQ9Y276 419 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 CLIC2O15247 247 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 MGRN1O60291 552 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 ATP2A2P16615 1042 aaKnown RBP10.4□□□□□ -0.74
VCAN-210ENST00000513960 ZNF76P36508 570 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms