RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 SPTLC3Q9NUV7 552 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 ARHGEF12Q9NZN5 1544 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 KIAA1107Q9UPP5 1409 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 SAMD9LQ8IVG5 1584 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 DIP2CQ9Y2E4 1556 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 A2MP01023 1474 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 CDC42BPAQ5VT25 1732 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 SUPT6HQ7KZ85 1726 aaKnown RBP5.2□□□□□ -1.58
NUP54-212ENST00000513248 H7C1D1 291 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 FKBP9O95302 570 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 KNG1P01042 644 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 SLC9A1P19634 815 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 PTGS1P23219 599 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 PTX3P26022 381 aaPredicted RBP5.2□□□□□ -1.58
NUP54-212ENST00000513248 KIF11P52732 1056 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 MOGSQ13724 837 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 FAM50AQ14320 339 aaKnown RBP5.2□□□□□ -1.58
NUP54-212ENST00000513248 CRIP3Q6Q6R5 217 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 GLB1LQ6UWU2 654 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 FKBP9P1Q75LS8 142 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 FILIP1Q7Z7B0 1213 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 NUDT10Q8NFP7 164 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 NUDT11Q96G61 164 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 TACO1Q9BSH4 297 aaKnown RBP5.2□□□□□ -1.58
NUP54-212ENST00000513248 EMC7Q9NPA0 242 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 THG1LQ9NWX6 298 aaKnown RBP5.2□□□□□ -1.58
NUP54-212ENST00000513248 ZKSCAN5Q9Y2L8 839 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 ITSN2Q9NZM3 1697 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 UHRF1BP1Q6BDS2 1440 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 KDM5CP41229 1560 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 TIAM1Q13009 1591 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 LRRC9Q6ZRR7 1453 aa5.2□□□□□ -1.58
NUP54-212ENST00000513248 ATP7AQ04656 1500 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 GAS7O60861 476 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 HIP1RO75146 1068 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 KLHL18O94889 574 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 MC4RP32245 332 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 ACVRL1P37023 503 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 ID4P47928 161 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 HMGA2P52926 109 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 NFATC3Q12968 1075 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 TERF2Q15554 542 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 RNF187Q5TA31 235 aaPredicted RBP5.19□□□□□ -1.58
NUP54-212ENST00000513248 KANK2Q63ZY3 851 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 LHFPL2Q6ZUX7 228 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 KANSL1Q7Z3B3 1105 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 KLHL36Q8N4N3 616 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 GBP4Q96PP9 640 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 CDK5RAP1Q96SZ6 601 aaKnown RBP5.19□□□□□ -1.58
NUP54-212ENST00000513248 IFT22Q9H7X7 185 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.19□□□□□ -1.58
NUP54-212ENST00000513248 BARX1Q9HBU1 254 aaPredicted RBP5.19□□□□□ -1.58
NUP54-212ENST00000513248 GALNT8Q9NY28 637 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 CNTLNQ9NXG0 1405 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 WASHC2CQ9Y4E1 1318 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 CAMSAP2Q08AD1 1489 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 CCDC141Q6ZP82 1450 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 ABCA6Q8N139 1617 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 FER1L4A9Z1Z3 1794 aa5.19□□□□□ -1.58
NUP54-212ENST00000513248 H0Y858 1186 aa5.18□□□□□ -1.58
NUP54-212ENST00000513248 K7ESF4 209 aa5.18□□□□□ -1.58
NUP54-212ENST00000513248 LAMTOR5O43504 91 aa5.18□□□□□ -1.58
NUP54-212ENST00000513248 B4GALT3O60512 393 aa5.18□□□□□ -1.58
NUP54-212ENST00000513248 ALDH6A1Q02252 535 aaKnown RBP5.18□□□□□ -1.58
NUP54-212ENST00000513248 TMEM132BQ14DG7 1078 aa5.18□□□□□ -1.58
NUP54-212ENST00000513248 PLEKHH3Q7Z736 793 aa5.18□□□□□ -1.58
NUP54-212ENST00000513248 Q8N1X5 172 aa5.18□□□□□ -1.58
NUP54-212ENST00000513248 SCYL1Q96KG9 808 aa5.18□□□□□ -1.58
NUP54-212ENST00000513248 FOXB1Q99853 325 aa5.18□□□□□ -1.58
NUP54-212ENST00000513248 BTBD2Q9BX70 525 aa5.18□□□□□ -1.58
NUP54-212ENST00000513248 SCAND2PQ9GZW5 306 aaPredicted RBP5.18□□□□□ -1.58
NUP54-212ENST00000513248 PCDH12Q9NPG4 1184 aa5.18□□□□□ -1.58
NUP54-212ENST00000513248 INCENPQ9NQS7 918 aa5.18□□□□□ -1.58
NUP54-212ENST00000513248 ADAM29Q9UKF5 820 aa5.18□□□□□ -1.58
NUP54-212ENST00000513248 ZNF536O15090 1300 aa5.18□□□□□ -1.58
NUP54-212ENST00000513248 AGLP35573 1532 aa5.18□□□□□ -1.58
NUP54-212ENST00000513248 ZMYM3Q14202 1370 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 DHX29Q7Z478 1369 aaKnown RBP5.17□□□□□ -1.58
NUP54-212ENST00000513248 RTEL1-TNFRSF6BF6WH68 1400 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 MYOM3Q5VTT5 1437 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 OVOL3O00110 214 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 GPR39O43194 453 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 BRINP1O60477 761 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 FZD7O75084 574 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 KRT37O76014 449 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 KPNA1P52294 538 aaPredicted RBP5.17□□□□□ -1.58
NUP54-212ENST00000513248 IL13RA1P78552 427 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 OCRLQ01968 901 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 STRN3Q13033 797 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 STAT4Q14765 748 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 CDSNQ15517 529 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 ZNF174Q15697 407 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 LRSAM1Q6UWE0 723 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 DPP8Q6V1X1 898 aaPredicted RBP5.17□□□□□ -1.58
NUP54-212ENST00000513248 Q6ZUG5 572 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 CXXC5Q7LFL8 322 aaKnown RBP5.17□□□□□ -1.58
NUP54-212ENST00000513248 DDX42Q86XP3 938 aaKnown RBP eCLIP5.17□□□□□ -1.58
NUP54-212ENST00000513248 REXO1L1PQ8IX06 675 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 KBTBD2Q8IY47 623 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 ZNF610Q8N9Z0 462 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms