RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 B3GALT2O43825 422 aa4.49□□□□□ -1.69
NUP54-208ENST00000508604 DIAPH1O60610 1272 aaKnown RBP4.49□□□□□ -1.69
NUP54-208ENST00000508604 KRT37O76014 449 aa4.49□□□□□ -1.69
NUP54-208ENST00000508604 TOX4O94842 621 aa4.49□□□□□ -1.69
NUP54-208ENST00000508604 RASGRP1O95267 797 aa4.49□□□□□ -1.69
NUP54-208ENST00000508604 PRLP01236 227 aa4.49□□□□□ -1.69
NUP54-208ENST00000508604 RGS3P49796 1198 aa4.49□□□□□ -1.69
NUP54-208ENST00000508604 ATXN1P54253 815 aaKnown RBP4.49□□□□□ -1.69
NUP54-208ENST00000508604 CSRP2Q16527 193 aa4.49□□□□□ -1.69
NUP54-208ENST00000508604 TTC38Q5R3I4 469 aa4.49□□□□□ -1.69
NUP54-208ENST00000508604 NBPF6Q5VWK0 638 aa4.49□□□□□ -1.69
NUP54-208ENST00000508604 FSTL4Q6MZW2 842 aa4.49□□□□□ -1.69
NUP54-208ENST00000508604 MDGA1Q8NFP4 955 aa4.49□□□□□ -1.69
NUP54-208ENST00000508604 ST8SIA2Q92186 375 aa4.49□□□□□ -1.69
NUP54-208ENST00000508604 FOXRED1Q96CU9 486 aaPredicted RBP4.49□□□□□ -1.69
NUP54-208ENST00000508604 MAML3Q96JK9 1138 aa4.49□□□□□ -1.69
NUP54-208ENST00000508604 NBPF4Q96M43 638 aa4.49□□□□□ -1.69
NUP54-208ENST00000508604 C14orf93Q9H972 538 aaKnown RBP4.49□□□□□ -1.69
NUP54-208ENST00000508604 POLR3BQ9NW08 1133 aaPredicted RBP4.49□□□□□ -1.69
NUP54-208ENST00000508604 TRPS1Q9UHF7 1281 aa4.49□□□□□ -1.69
NUP54-208ENST00000508604 SFMBT1Q9UHJ3 866 aa4.49□□□□□ -1.69
NUP54-208ENST00000508604 ZAR1LA6NP61 321 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 PROZP22891 400 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 KIF11P52732 1056 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 TIGD2Q4W5G0 525 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 TMEM177Q53S58 311 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 LRRC55Q6ZSA7 311 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 HTR3DQ70Z44 454 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 NME9Q86XW9 330 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 VRK3Q8IV63 474 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 CMTM4Q8IZR5 234 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 GSTCDQ8NEC7 633 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 GPR150Q8NGU9 434 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 PCIF1Q9H4Z3 704 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 ACSS2Q9NR19 701 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 SIRPGQ9P1W8 387 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 SORCS3Q9UPU3 1222 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 CCDC163A0A0D9SF12 145 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 MASP2O00187 686 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 GYPEP15421 78 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 CD38P28907 300 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 BCAR1P56945 870 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 ANTXR2P58335 489 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 ADAM8P78325 824 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 SPIDRQ14159 915 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 DCAF17Q5H9S7 520 aaPredicted RBP4.48□□□□□ -1.69
NUP54-208ENST00000508604 PRAMEF9Q5VWM5 478 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 SYCE2Q6PIF2 218 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 RHOUQ7L0Q8 258 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 BMP8AQ7Z5Y6 402 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 CLEC14AQ86T13 490 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 IGSF22Q8N9C0 903 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 SLC7A14Q8TBB6 771 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 CPT1CQ8TCG5 803 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 NKD2Q969F2 451 aaPredicted RBP4.48□□□□□ -1.69
NUP54-208ENST00000508604 ZNF764Q96H86 408 aaPredicted RBP4.48□□□□□ -1.69
NUP54-208ENST00000508604 TUBGCP5Q96RT8 1024 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 EPC1Q9H2F5 836 aa4.48□□□□□ -1.69
NUP54-208ENST00000508604 ADARB2Q9NS39 739 aaKnown RBP4.48□□□□□ -1.69
NUP54-208ENST00000508604 TAP1Q03518 808 aa4.47□□□□□ -1.69
NUP54-208ENST00000508604 MAN2A1Q16706 1144 aa4.47□□□□□ -1.69
NUP54-208ENST00000508604 PLEKHG4Q58EX7 1191 aa4.47□□□□□ -1.69
NUP54-208ENST00000508604 TRIM61Q5EBN2 209 aa4.47□□□□□ -1.69
NUP54-208ENST00000508604 NAIF1Q69YI7 327 aaPredicted RBP4.47□□□□□ -1.69
NUP54-208ENST00000508604 APBB1IPQ7Z5R6 666 aaPredicted RBP4.47□□□□□ -1.69
NUP54-208ENST00000508604 DDX53Q86TM3 631 aaKnown RBP4.47□□□□□ -1.69
NUP54-208ENST00000508604 MLST8Q9BVC4 326 aa4.47□□□□□ -1.69
NUP54-208ENST00000508604 TOR3AQ9H497 397 aa4.47□□□□□ -1.69
NUP54-208ENST00000508604 DNAI1Q9UI46 699 aa4.47□□□□□ -1.69
NUP54-208ENST00000508604 TRIM24O15164 1050 aa4.46□□□□□ -1.7
NUP54-208ENST00000508604 SCAF4O95104 1147 aaKnown RBP4.46□□□□□ -1.7
NUP54-208ENST00000508604 CYP17A1P05093 508 aa4.46□□□□□ -1.7
NUP54-208ENST00000508604 ZBTB48P10074 688 aaPredicted RBP4.46□□□□□ -1.7
NUP54-208ENST00000508604 LAG3P18627 525 aa4.46□□□□□ -1.7
NUP54-208ENST00000508604 IL12RB1P42701 662 aa4.46□□□□□ -1.7
NUP54-208ENST00000508604 KIR2DL3P43628 341 aa4.46□□□□□ -1.7
NUP54-208ENST00000508604 USP14P54578 494 aa4.46□□□□□ -1.7
NUP54-208ENST00000508604 ZNF174Q15697 407 aa4.46□□□□□ -1.7
NUP54-208ENST00000508604 HECTD2Q5U5R9 776 aa4.46□□□□□ -1.7
NUP54-208ENST00000508604 OTOP1Q7RTM1 612 aa4.46□□□□□ -1.7
NUP54-208ENST00000508604 PRIMA1Q86XR5 153 aa4.46□□□□□ -1.7
NUP54-208ENST00000508604 SUPT20HQ8NEM7 779 aa4.46□□□□□ -1.7
NUP54-208ENST00000508604 NAF1Q96HR8 494 aaKnown RBP4.46□□□□□ -1.7
NUP54-208ENST00000508604 UIMC1Q96RL1 719 aa4.46□□□□□ -1.7
NUP54-208ENST00000508604 EIF2B4Q9UI10 523 aaKnown RBP4.46□□□□□ -1.7
NUP54-208ENST00000508604 TCRBV16S1A1N1A0A5B0 115 aa4.45□□□□□ -1.7
NUP54-208ENST00000508604 B4E1Z4 1266 aa4.45□□□□□ -1.7
NUP54-208ENST00000508604 NRP1O14786 923 aa4.45□□□□□ -1.7
NUP54-208ENST00000508604 HK1P19367 917 aa4.45□□□□□ -1.7
NUP54-208ENST00000508604 BRAPQ7Z569 592 aa4.45□□□□□ -1.7
NUP54-208ENST00000508604 ADGRG3Q86Y34 549 aa4.45□□□□□ -1.7
NUP54-208ENST00000508604 C16orf92Q96LL3 132 aa4.45□□□□□ -1.7
NUP54-208ENST00000508604 MRPL4Q9BYD3 311 aaKnown RBP4.45□□□□□ -1.7
NUP54-208ENST00000508604 H7C1D1 291 aa4.45□□□□□ -1.7
NUP54-208ENST00000508604 FSBPO95073 299 aa4.45□□□□□ -1.7
NUP54-208ENST00000508604 RANGAP1P46060 587 aaPredicted RBP4.45□□□□□ -1.7
NUP54-208ENST00000508604 HNRNPA0Q13151 305 aaKnown RBP4.45□□□□□ -1.7
NUP54-208ENST00000508604 TIGD7Q6NT04 549 aaPredicted RBP4.45□□□□□ -1.7
NUP54-208ENST00000508604 SCLYQ96I15 445 aa4.45□□□□□ -1.7
NUP54-208ENST00000508604 CPPED1Q9BRF8 314 aaPredicted RBP4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms