RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 FSD2A1L4K1 749 aa12.96□□□□□ -0.33
HMGCS1-204ENST00000507293 EML1O00423 815 aa12.96□□□□□ -0.33
HMGCS1-204ENST00000507293 DTNBO60941 627 aa12.96□□□□□ -0.33
HMGCS1-204ENST00000507293 CDKL5O76039 1030 aa12.96□□□□□ -0.33
HMGCS1-204ENST00000507293 DNM2P50570 870 aa12.96□□□□□ -0.33
HMGCS1-204ENST00000507293 PSMC5P62195 406 aa12.96□□□□□ -0.33
HMGCS1-204ENST00000507293 FDXACB1Q9BRP7 624 aaPredicted RBP12.96□□□□□ -0.33
HMGCS1-204ENST00000507293 SLKQ9H2G2 1235 aaPredicted RBP12.96□□□□□ -0.33
HMGCS1-204ENST00000507293 DACT1Q9NYF0 836 aa12.96□□□□□ -0.33
HMGCS1-204ENST00000507293 SPG21Q9NZD8 308 aa12.96□□□□□ -0.33
HMGCS1-204ENST00000507293 SUCLA2Q9P2R7 463 aaPredicted RBP12.96□□□□□ -0.33
HMGCS1-204ENST00000507293 VAV3Q9UKW4 847 aa12.96□□□□□ -0.33
HMGCS1-204ENST00000507293 HIDE1A8MVS5 230 aa12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 LOC730098B7Z3J9 87 aa12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 MAFO75444 373 aaPredicted RBP12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 EOMESO95936 686 aa12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 SRGAP2BP0DMP2 458 aa12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 SFPQP23246 707 aaKnown RBP eCLIP12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 HOXD11P31277 338 aaPredicted RBP12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 CDC42EP1Q00587 391 aa12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 KRT17Q04695 432 aa12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 LLGL2Q6P1M3 1020 aa12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 ANO5Q75V66 913 aa12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 NEK8Q86SG6 692 aa12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 ZNF410Q86VK4 478 aa12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 RHPN2Q8IUC4 686 aa12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 KSR1Q8IVT5 923 aa12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 SLC39A11Q8N1S5 342 aa12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 NLRP4Q96MN2 994 aa12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 PHF7Q9BWX1 381 aaPredicted RBP12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 MRPL9Q9BYD2 267 aaKnown RBP12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 KCNMB3Q9NPA1 279 aa12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 GJB4Q9NTQ9 266 aa12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 TPCN1Q9ULQ1 816 aa12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 PIN4Q9Y237 131 aaKnown RBP12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 TECTAO75443 2155 aa12.95□□□□□ -0.34
HMGCS1-204ENST00000507293 PFKFB2O60825 505 aa12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 GCFC2P16383 781 aaKnown RBP12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 XBP1P17861 261 aa12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 TECP42680 631 aa12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 PHKA2P46019 1235 aa12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 QARSP47897 775 aaKnown RBP12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 NPEPPSP55786 919 aa12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 PPP2R5CQ13362 524 aa12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 KCNC3Q14003 757 aa12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 TWF2Q6IBS0 349 aaKnown RBP12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 ANKRD54Q6NXT1 300 aa12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 PIK3AP1Q6ZUJ8 805 aa12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 HFE2Q6ZVN8 426 aa12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 TMC7Q7Z402 723 aa12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 OXER1Q8TDS5 423 aa12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 SUSD6Q92537 303 aa12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 LPPQ93052 612 aa12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 RPGRIP1Q96KN7 1286 aa12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 FAM20AQ96MK3 541 aa12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 APOL5Q9BWW9 433 aa12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 NGRNQ9NPE2 291 aaKnown RBP12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 CYP26B1Q9NR63 512 aa12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 CHST12Q9NRB3 414 aa12.94□□□□□ -0.34
HMGCS1-204ENST00000507293 ZNF318Q5VUA4 2279 aa12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 KMT2EQ8IZD2 1858 aa12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 NT5C1B-RDH14C9J2C7 533 aa12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 CCNT1O60563 726 aaKnown RBP12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 DKC1O60832 514 aaKnown RBP eCLIP12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 CTDNEP1O95476 244 aa12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 BCAR1P56945 870 aa12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 SMC1AQ14683 1233 aaKnown RBP12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 CBX2Q14781 532 aaPredicted RBP12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 LONRF3Q496Y0 759 aa12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 PPP4R3AQ6IN85 833 aa12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 SYCE2Q6PIF2 218 aa12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 TMEM184AQ6ZMB5 413 aa12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 CATSPER4Q7RTX7 472 aa12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 ZNF579Q8NAF0 562 aaKnown RBP12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 EDAQ92838 391 aa12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 CEP170P1Q96L14 293 aa12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 JPH2Q9BR39 696 aaPredicted RBP12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 TRAIPQ9BWF2 469 aa12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 INO80BQ9C086 356 aaPredicted RBP12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 S1PR5Q9H228 398 aa12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 BMP2KQ9NSY1 1161 aaPredicted RBP12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 FAM105AQ9NUU6 356 aa12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 WRAP73Q9P2S5 460 aaPredicted RBP12.93□□□□□ -0.34
HMGCS1-204ENST00000507293 FAM205CA6NFA0 338 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 MEIS3P2A8K0S8 358 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 TBX3O15119 743 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 MARCH6O60337 910 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 ZC3H11AO75152 810 aaKnown RBP eCLIP12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 NEFLP07196 543 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 P4HBP07237 508 aaKnown RBP12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 SKIP12755 728 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 CA8P35219 290 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 ALDH7A1P49419 539 aaKnown RBP12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 POLGP54098 1239 aaPredicted RBP12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 EARS2Q5JPH6 523 aaKnown RBP12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 NCAPH2Q6IBW4 605 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 GLB1LQ6UWU2 654 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 POTEDQ86YR6 584 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 SLC7A3Q8WY07 619 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 HAS1Q92839 578 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms