RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 UBE4BO95155 1302 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 FRMD3A2A2Y4 597 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 KIAA0391O15091 583 aaKnown RBP9.36□□□□□ -0.91
PDGFC-205ENST00000506880 SORBS3O60504 671 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 KIF20AO95235 890 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 FGBP02675 491 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 CHRNA1P02708 482 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 PLS3P13797 630 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 PPP1R2P41236 205 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 SYKP43405 635 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 IGBP1P78318 339 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 CEBPZQ03701 1054 aaKnown RBP9.36□□□□□ -0.91
PDGFC-205ENST00000506880 FAM160A1Q05DH4 1040 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 LAMTOR4Q0VGL1 99 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 PSMD2Q13200 908 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 E2F4Q16254 413 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 RASIP1Q5U651 963 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 FAM173BQ6P4H8 233 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 SHC4Q6S5L8 630 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 CCDC65Q8IXS2 484 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 HACE1Q8IYU2 909 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 PIGOQ8TEQ8 1089 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 EPSTI1Q96J88 318 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 C7orf25Q9BPX7 421 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 IFIH1Q9BYX4 1025 aaKnown RBP9.36□□□□□ -0.91
PDGFC-205ENST00000506880 WNT8AQ9H1J5 351 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 TSPYL2Q9H2G4 693 aaPredicted RBP9.36□□□□□ -0.91
PDGFC-205ENST00000506880 PRO3102Q9H379 93 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 SUGCTQ9HAC7 445 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 UBN1Q9NPG3 1134 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 XPNPEP1Q9NQW7 623 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 PRDM5Q9NQX1 630 aaPredicted RBP9.36□□□□□ -0.91
PDGFC-205ENST00000506880 BLOC1S4Q9NUP1 217 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 TELO2Q9Y4R8 837 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 SCN5AQ14524 2016 aa9.36□□□□□ -0.91
PDGFC-205ENST00000506880 ZNF623O75123 536 aa9.35□□□□□ -0.91
PDGFC-205ENST00000506880 TBCAO75347 108 aaKnown RBP9.35□□□□□ -0.91
PDGFC-205ENST00000506880 RPS6KA5O75582 802 aa9.35□□□□□ -0.91
PDGFC-205ENST00000506880 EOMESO95936 686 aa9.35□□□□□ -0.91
PDGFC-205ENST00000506880 STAG3L1P0CL83 205 aa9.35□□□□□ -0.91
PDGFC-205ENST00000506880 ZSCAN20P17040 1043 aaPredicted RBP9.35□□□□□ -0.91
PDGFC-205ENST00000506880 NPEPPSP55786 919 aa9.35□□□□□ -0.91
PDGFC-205ENST00000506880 NLRP11P59045 1033 aaKnown RBP9.35□□□□□ -0.91
PDGFC-205ENST00000506880 PAK2Q13177 524 aa9.35□□□□□ -0.91
PDGFC-205ENST00000506880 MKRN4PQ13434 485 aaPredicted RBP9.35□□□□□ -0.91
PDGFC-205ENST00000506880 HIC1Q14526 733 aa9.35□□□□□ -0.91
PDGFC-205ENST00000506880 KARSQ15046 597 aaKnown RBP9.35□□□□□ -0.91
PDGFC-205ENST00000506880 ECM1Q16610 540 aa9.35□□□□□ -0.91
PDGFC-205ENST00000506880 MAPK6Q16659 721 aa9.35□□□□□ -0.91
PDGFC-205ENST00000506880 LRIT3Q3SXY7 679 aa9.35□□□□□ -0.91
PDGFC-205ENST00000506880 NAALADL2Q58DX5 795 aa9.35□□□□□ -0.91
PDGFC-205ENST00000506880 RUFY4Q6ZNE9 571 aa9.35□□□□□ -0.91
PDGFC-205ENST00000506880 TMEM174Q8WUU8 243 aa9.35□□□□□ -0.91
PDGFC-205ENST00000506880 PRPF31Q8WWY3 499 aaKnown RBP9.35□□□□□ -0.91
PDGFC-205ENST00000506880 NLRP7Q8WX94 980 aa9.35□□□□□ -0.91
PDGFC-205ENST00000506880 CLIC6Q96NY7 704 aa9.35□□□□□ -0.91
PDGFC-205ENST00000506880 FTOQ9C0B1 505 aaKnown RBP eCLIP9.35□□□□□ -0.91
PDGFC-205ENST00000506880 IFT122Q9HBG6 1241 aa9.35□□□□□ -0.91
PDGFC-205ENST00000506880 ARHGAP28Q9P2N2 729 aa9.35□□□□□ -0.91
PDGFC-205ENST00000506880 STK39Q9UEW8 545 aa9.35□□□□□ -0.91
PDGFC-205ENST00000506880 TRIOBPQ9H2D6 2365 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 H0YGN5 161 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 ACKR2O00590 384 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 EIF3DO15371 548 aaKnown RBP eCLIP9.34□□□□□ -0.91
PDGFC-205ENST00000506880 POLR2DO15514 142 aaKnown RBP9.34□□□□□ -0.91
PDGFC-205ENST00000506880 USO1O60763 962 aaKnown RBP9.34□□□□□ -0.91
PDGFC-205ENST00000506880 ERLIN2O94905 339 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 FAM13AO94988 1023 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 PIGRP01833 764 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 GLRA2P23416 452 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 CYP2C18P33260 490 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 MAGEA10P43363 369 aaPredicted RBP9.34□□□□□ -0.91
PDGFC-205ENST00000506880 KCNJ6P48051 423 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 CLCN3P51790 818 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 CHMP4BP1P59074 171 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 ZNF200P98182 395 aaPredicted RBP9.34□□□□□ -0.91
PDGFC-205ENST00000506880 LPIN1Q14693 890 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 TMEM240Q5SV17 173 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 PLA2G4FQ68DD2 849 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 NOTUMQ6P988 496 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 FOXR2Q6PJQ5 311 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 ZPBP2Q6X784 338 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 SLC24A5Q71RS6 500 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 SH3RF1Q7Z6J0 888 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 GPBP1Q86WP2 473 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 RHPN2Q8IUC4 686 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 TDHQ8IZJ6 230 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 RNF149Q8NC42 400 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 DEPTORQ8TB45 409 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 BADQ92934 168 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 SCLT1Q96NL6 688 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 TRIM9Q9C026 710 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 UBE2OQ9C0C9 1292 aaKnown RBP9.34□□□□□ -0.91
PDGFC-205ENST00000506880 FAM49AQ9H0Q0 323 aaPredicted RBP9.34□□□□□ -0.91
PDGFC-205ENST00000506880 POLR3FQ9H1D9 316 aaPredicted RBP9.34□□□□□ -0.91
PDGFC-205ENST00000506880 FZD8Q9H461 694 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 ERVK-5Q9HDB9 667 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 AGPAT5Q9NUQ2 364 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 RMND1Q9NWS8 449 aa9.34□□□□□ -0.91
PDGFC-205ENST00000506880 EXOC7Q9UPT5 735 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms