RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 PHLDB3Q6NSJ2 640 aa10.72□□□□□ -0.69
CLIP1-204ENST00000501271 PADI6Q6TGC4 694 aa10.72□□□□□ -0.69
CLIP1-204ENST00000501271 PALB2Q86YC2 1186 aa10.72□□□□□ -0.69
CLIP1-204ENST00000501271 HOMEZQ8IX15 550 aa10.72□□□□□ -0.69
CLIP1-204ENST00000501271 SYCP3Q8IZU3 236 aa10.72□□□□□ -0.69
CLIP1-204ENST00000501271 RASGEF1CQ8N431 466 aa10.72□□□□□ -0.69
CLIP1-204ENST00000501271 WHAMMQ8TF30 809 aa10.72□□□□□ -0.69
CLIP1-204ENST00000501271 HOOK2Q96ED9 719 aa10.72□□□□□ -0.69
CLIP1-204ENST00000501271 HES6Q96HZ4 224 aa10.72□□□□□ -0.69
CLIP1-204ENST00000501271 DDX47Q9H0S4 455 aaKnown RBP10.72□□□□□ -0.69
CLIP1-204ENST00000501271 TAS2R14Q9NYV8 317 aa10.72□□□□□ -0.69
CLIP1-204ENST00000501271 RSPH14Q9UHP6 348 aa10.72□□□□□ -0.69
CLIP1-204ENST00000501271 FEM1BQ9UK73 627 aa10.72□□□□□ -0.69
CLIP1-204ENST00000501271 RPTORQ8N122 1335 aa10.71□□□□□ -0.69
CLIP1-204ENST00000501271 TRIM66O15016 1216 aa10.71□□□□□ -0.69
CLIP1-204ENST00000501271 BUB1BO60566 1050 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-204ENST00000501271 LMNB1P20700 586 aa10.71□□□□□ -0.69
CLIP1-204ENST00000501271 ABCB4P21439 1286 aa10.71□□□□□ -0.69
CLIP1-204ENST00000501271 INPP5BP32019 993 aa10.71□□□□□ -0.69
CLIP1-204ENST00000501271 PTGER2P43116 358 aa10.71□□□□□ -0.69
CLIP1-204ENST00000501271 NPEPPSP55786 919 aa10.71□□□□□ -0.69
CLIP1-204ENST00000501271 ARHGAP44Q17R89 818 aa10.71□□□□□ -0.69
CLIP1-204ENST00000501271 KCTD16Q68DU8 428 aa10.71□□□□□ -0.69
CLIP1-204ENST00000501271 DDX42Q86XP3 938 aaKnown RBP eCLIP10.71□□□□□ -0.69
CLIP1-204ENST00000501271 SLC9A9Q8IVB4 645 aa10.71□□□□□ -0.69
CLIP1-204ENST00000501271 SYCE1Q8N0S2 351 aa10.71□□□□□ -0.69
CLIP1-204ENST00000501271 LMO3Q8TAP4 145 aa10.71□□□□□ -0.69
CLIP1-204ENST00000501271 SLC35G2Q8TBE7 412 aa10.71□□□□□ -0.69
CLIP1-204ENST00000501271 LMBR1Q8WVP7 490 aa10.71□□□□□ -0.69
CLIP1-204ENST00000501271 CALR3Q96L12 384 aaKnown RBP10.71□□□□□ -0.69
CLIP1-204ENST00000501271 RIT2Q99578 217 aa10.71□□□□□ -0.69
CLIP1-204ENST00000501271 CAPS2Q9BXY5 557 aa10.71□□□□□ -0.69
CLIP1-204ENST00000501271 ISCUQ9H1K1 167 aa10.71□□□□□ -0.69
CLIP1-204ENST00000501271 TAF1DQ9H5J8 278 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-204ENST00000501271 KCNH7Q9NS40 1196 aa10.71□□□□□ -0.69
CLIP1-204ENST00000501271 CCPG1Q9ULG6 757 aa10.71□□□□□ -0.69
CLIP1-204ENST00000501271 RGPD3A6NKT7 1758 aaPredicted RBP10.71□□□□□ -0.7
CLIP1-204ENST00000501271 RGPD4Q7Z3J3 1758 aa10.71□□□□□ -0.7
CLIP1-204ENST00000501271 BHMG1C9JSJ3 638 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-204ENST00000501271 DHX15O43143 795 aaKnown RBP10.7□□□□□ -0.7
CLIP1-204ENST00000501271 SART1O43290 800 aaKnown RBP10.7□□□□□ -0.7
CLIP1-204ENST00000501271 TBC1D12O60347 775 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 LRRN2O75325 713 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 CLSTN1O94985 981 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 TMEM253P0C7T8 217 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 ITGB3BPQ13352 177 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-204ENST00000501271 TTC19Q6DKK2 380 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-204ENST00000501271 MIER3Q7Z3K6 550 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 OGFOD1Q8N543 542 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 NEK9Q8TD19 979 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 RFFLQ8WZ73 363 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 ARHGEF26Q96DR7 871 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 DEFB129Q9H1M3 183 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 NEUROG2Q9H2A3 272 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 PCIF1Q9H4Z3 704 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 ZNF277Q9NRM2 450 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-204ENST00000501271 FEZ2Q9UHY8 353 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-204ENST00000501271 SCAF8Q9UPN6 1271 aaKnown RBP10.7□□□□□ -0.7
CLIP1-204ENST00000501271 KRIT1O00522 736 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 ICAM1P05362 532 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 HSPA9P38646 679 aaKnown RBP10.7□□□□□ -0.7
CLIP1-204ENST00000501271 GNGT1P63211 74 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 HLTFQ14527 1009 aaKnown RBP eCLIP10.7□□□□□ -0.7
CLIP1-204ENST00000501271 DCAF12L1Q5VU92 463 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 LARGE2Q8N3Y3 721 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 CLEC4DQ8WXI8 215 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 SH2D3AQ9BRG2 576 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 PGAP2Q9UHJ9 254 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 PPP1R9AQ9ULJ8 1098 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 ZHX2Q9Y6X8 837 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 EMSYQ7Z589 1322 aa10.7□□□□□ -0.7
CLIP1-204ENST00000501271 WDR81Q562E7 1941 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 ZNFX1Q9P2E3 1918 aaKnown RBP10.69□□□□□ -0.7
CLIP1-204ENST00000501271 TMEM150BA6NC51 233 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 DCAF8L1A6NGE4 600 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 FOXN3O00409 490 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-204ENST00000501271 EIF3HO15372 352 aaKnown RBP eCLIP10.69□□□□□ -0.7
CLIP1-204ENST00000501271 BCRP11274 1271 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 SKOR1P84550 965 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 PPATQ06203 517 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 SPP2Q13103 211 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 DGKZQ13574 1117 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 KIF22Q14807 665 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 SKIDA1Q1XH10 827 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 CD302Q8IX05 232 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 ZSWIM2Q8NEG5 633 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 SLC20A1Q8WUM9 679 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 CTNNBL1Q8WYA6 563 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-204ENST00000501271 CBWD1Q9BRT8 395 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 ZNF341Q9BYN7 854 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 THAP2Q9H0W7 228 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 RABEP2Q9H5N1 569 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 SEPT11Q9NVA2 429 aaKnown RBP10.69□□□□□ -0.7
CLIP1-204ENST00000501271 AMACRQ9UHK6 382 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 AMFRQ9UKV5 643 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 COG5Q9UP83 839 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 CCDC188H7C350 402 aa10.69□□□□□ -0.7
CLIP1-204ENST00000501271 DDX3YO15523 660 aaKnown RBP10.69□□□□□ -0.7
CLIP1-204ENST00000501271 P4HBP07237 508 aaKnown RBP10.69□□□□□ -0.7
CLIP1-204ENST00000501271 RARRES1P49788 294 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms