RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 PSMC2P35998 433 aaKnown RBP17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 STAT1P42224 750 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 ATP1A2P50993 1020 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 HIRAP54198 1017 aaPredicted RBP17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 GALCP54803 685 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 NPEPPSP55786 919 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 DLGAP5Q15398 846 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 PEX26Q7Z412 305 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 DDX42Q86XP3 938 aaKnown RBP eCLIP17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 MYCT1Q8N699 235 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 SYT11Q9BT88 431 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 NEUROG2Q9H2A3 272 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 ATRNL1Q5VV63 1379 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 A6NNZ2 444 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 EVI5O60447 810 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 FAM13AO94988 1023 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 ITGA4P13612 1032 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 TUBB8Q3ZCM7 444 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 KIAA1755Q5JYT7 1200 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 VPS36Q86VN1 386 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 TPH2Q8IWU9 490 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 SPICE1Q8N0Z3 855 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 CEP120Q8N960 986 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 HES6Q96HZ4 224 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 GPR88Q9GZN0 384 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 GPRC5DQ9NZD1 345 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 PLAAQ9Y263 795 aa17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 SPDYE2BA6NHP3 402 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 F8VZ95 297 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 H0YGN5 161 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 SPDYE6P0CI01 402 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 SOX5P35711 763 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 CUL1Q13616 776 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 UAP1Q16222 522 aaPredicted RBP17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 AGBL3Q8NEM8 1001 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 LMBR1Q8WVP7 490 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 SLC5A5Q92911 643 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 ATP6V1G3Q96LB4 118 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 DDX47Q9H0S4 455 aaKnown RBP17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 DMAC2Q9NW81 257 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 SERPINA10Q9UK55 444 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 CEP83Q9Y592 693 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 NFS1Q9Y697 457 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 TMCO5BA8MYB1 307 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 EBAG9O00559 213 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 HSD17B3P37058 310 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 FMO5P49326 533 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 PPP2R5CQ13362 524 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 EAPPQ56P03 285 aaPredicted RBP17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 MKNK1Q9BUB5 465 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 STK33Q9BYT3 514 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 TMBIM4Q9HC24 238 aa17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 WRAP73Q9P2S5 460 aaPredicted RBP17.48■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 NCANO14594 1321 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 CCDC188H7C350 402 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 CHMP2AO43633 222 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 ZNF131P52739 623 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 HLTFQ14527 1009 aaKnown RBP eCLIP17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 KCTD19Q17RG1 926 aaPredicted RBP17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 CBWD6Q4V339 395 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 CBWD3Q5JTY5 395 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 CBWD5Q5RIA9 395 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 LRCH2Q5VUJ6 765 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 ZNF720Q7Z2F6 126 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 DAAM2Q86T65 1068 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 PACS2Q86VP3 889 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 EFCAB13Q8IY85 973 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 PARVGQ9HBI0 331 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 OSGEPQ9NPF4 335 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 DNAJC12Q9UKB3 198 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 FAM169AQ9Y6X4 670 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 FRMPD4Q14CM0 1322 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 MYH11P35749 1972 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 KRIT1O00522 736 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 NR1D1P20393 614 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 ECE1P42892 770 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 PPATQ06203 517 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 DRAP1Q14919 205 aaPredicted RBP17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 LRIG3Q6UXM1 1119 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 GLYCTKQ8IVS8 523 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 SYCE1Q8N0S2 351 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 BANK1Q8NDB2 785 aa17.47■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 IGSF9BQ9UPX0 1349 aa17.46■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 A0A087WUV0 522 aaPredicted RBP17.46■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 ENTPD3O75355 529 aa17.46■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 FLT3P36888 993 aa17.46■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 GUCY1A3Q02108 690 aa17.46■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 ITGB3BPQ13352 177 aaPredicted RBP17.46■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 CEP85LQ5SZL2 805 aa17.46■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 DPY19L2Q6NUT2 758 aa17.46■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 PPM1EQ8WY54 764 aa17.46■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 TMEM39BQ9GZU3 492 aa17.46■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 AGPAT3Q9NRZ7 376 aa17.46■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 SAMM50Q9Y512 469 aa17.46■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 GLTPD2A6NH11 291 aa17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 HMGB1P1B2RPK0 211 aaPredicted RBP17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 DDX3YO15523 660 aaKnown RBP17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 BUB1BO60566 1050 aaPredicted RBP17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 CPP00450 1065 aa17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 CFBP00751 764 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms