RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, human

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-223	ENST00000496024	RAD51AP2	Q09MP3	1159 aa		10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	DHX8	Q14562	1220 aa	Known RBP	10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	SLC39A14	Q15043	492 aa		10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	KARS	Q15046	597 aa	Known RBP	10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	USP49	Q70CQ1	688 aa		10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	CATSPER4	Q7RTX7	472 aa		10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	ZNF410	Q86VK4	478 aa		10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	ZNF710	Q8N1W2	664 aa		10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	MCPH1	Q8NEM0	835 aa		10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	CALML4	Q96GE6	196 aa		10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	EPSTI1	Q96J88	318 aa		10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	CHAMP1	Q96JM3	812 aa		10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	FTHL17	Q9BXU8	183 aa		10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	TTYH1	Q9H313	450 aa	Predicted RBP	10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	MINDY3	Q9H8M7	445 aa		10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	CERS4	Q9HA82	394 aa		10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	SLC28A3	Q9HAS3	691 aa		10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	ZDHHC9	Q9Y397	364 aa		10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	SRPRB	Q9Y5M8	271 aa	Known RBP	10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	CHD9	Q3L8U1	2897 aa		10.91	□□□□□ -0.66
CALD1-223	ENST00000496024	TCHH	Q07283	1943 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	LRRIQ4	A6NIV6	560 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	SPTLC2	O15270	562 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	ARHGEF15	O94989	841 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	PLA2G4B	P0C869	781 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	ZSCAN20	P17040	1043 aa	Predicted RBP	10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	PLCG1	P19174	1290 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	SFPQ	P23246	707 aa	Known RBP eCLIP	10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	GLRA2	P23416	452 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	ARL2	P36404	184 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	PHKA2	P46019	1235 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	CAPS	Q13938	189 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	TFDP1	Q14186	410 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	MXD4	Q14582	209 aa	Predicted RBP	10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	HYI	Q5T013	277 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	PPP2R2D	Q66LE6	453 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	KRI1	Q8N9T8	703 aa	Known RBP	10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	RNF169	Q8NCN4	708 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	LINC00301	Q8NCQ3	95 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	SYMPK	Q92797	1274 aa	Known RBP	10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	TOP1MT	Q969P6	601 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	YME1L1	Q96TA2	773 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	RAD9A	Q99638	391 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	RUSC1	Q9BVN2	902 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	PANK2	Q9BZ23	570 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	INO80B	Q9C086	356 aa	Predicted RBP	10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	NT5C3A	Q9H0P0	336 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	TSPYL2	Q9H2G4	693 aa	Predicted RBP	10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	SEMA6B	Q9H3T3	888 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	ZNF576	Q9H609	170 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	IFT122	Q9HBG6	1241 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	MYH11	P35749	1972 aa		10.9	□□□□□ -0.66
CALD1-223	ENST00000496024	INO80B-WBP1	J3KQ70	363 aa		10.89	□□□□□ -0.67
CALD1-223	ENST00000496024	BRD1	O95696	1058 aa		10.89	□□□□□ -0.67
CALD1-223	ENST00000496024	LIG1	P18858	919 aa		10.89	□□□□□ -0.67
CALD1-223	ENST00000496024	DSC3	Q14574	896 aa		10.89	□□□□□ -0.67
CALD1-223	ENST00000496024	TPRN	Q4KMQ1	711 aa		10.89	□□□□□ -0.67
CALD1-223	ENST00000496024	TMEM119	Q4V9L6	283 aa		10.89	□□□□□ -0.67
CALD1-223	ENST00000496024	RINT1	Q6NUQ1	792 aa		10.89	□□□□□ -0.67
CALD1-223	ENST00000496024	GPR153	Q6NV75	609 aa		10.89	□□□□□ -0.67
CALD1-223	ENST00000496024	SPRED2	Q7Z698	418 aa		10.89	□□□□□ -0.67
CALD1-223	ENST00000496024	SRGAP1	Q7Z6B7	1085 aa		10.89	□□□□□ -0.67
CALD1-223	ENST00000496024	LRRC15	Q8TF66	581 aa		10.89	□□□□□ -0.67
CALD1-223	ENST00000496024	BSND	Q8WZ55	320 aa		10.89	□□□□□ -0.67
CALD1-223	ENST00000496024	RGS18	Q9NS28	235 aa		10.89	□□□□□ -0.67
CALD1-223	ENST00000496024	LRFN2	Q9ULH4	789 aa		10.89	□□□□□ -0.67
CALD1-223	ENST00000496024	PIN4	Q9Y237	131 aa	Known RBP	10.89	□□□□□ -0.67
CALD1-223	ENST00000496024	INSL6	Q9Y581	213 aa		10.89	□□□□□ -0.67
CALD1-223	ENST00000496024	NPHP3-ACAD11	A0A0J9YXS1	232 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	SFI1	A8K8P3	1242 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024		C9IYK1	514 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	HIP1R	O75146	1068 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	ERLIN2	O94905	339 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	YEATS4	O95619	227 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	STAG3L1	P0CL83	205 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	TXLNA	P40222	546 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	ME1	P48163	572 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	SARS	P49591	514 aa	Known RBP	10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	GATM	P50440	423 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	PTEN	P60484	403 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	CACNB1	Q02641	598 aa	Predicted RBP	10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	MCM6	Q14566	821 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	GRIN2C	Q14957	1233 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	LONRF3	Q496Y0	759 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	PAN2	Q504Q3	1202 aa	Known RBP	10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	TWF2	Q6IBS0	349 aa	Known RBP	10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	C1orf186	Q6ZWK4	172 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	SLC24A5	Q71RS6	500 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	GPBP1	Q86WP2	473 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	NPAS4	Q8IUM7	802 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	PDILT	Q8N807	584 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	DEPTOR	Q8TB45	409 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	ARNTL2	Q8WYA1	636 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	IFT74	Q96LB3	600 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	CCSER1	Q9C0I3	900 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	C1orf112	Q9NSG2	853 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	CFAP45	Q9UL16	551 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	MTUS1	Q9ULD2	1270 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	PCDHB7	Q9Y5E2	793 aa		10.88	□□□□□ -0.67
CALD1-223	ENST00000496024	CHD7	Q9P2D1	2997 aa		10.88	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms