RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 LRRC55Q6ZSA7 311 aa6.18□□□□□ -1.42
VPS50-219ENST00000495039 PRIMA1Q86XR5 153 aa6.18□□□□□ -1.42
VPS50-219ENST00000495039 MDGA1Q8NFP4 955 aa6.18□□□□□ -1.42
VPS50-219ENST00000495039 THAP3Q8WTV1 239 aaPredicted RBP6.18□□□□□ -1.42
VPS50-219ENST00000495039 DYDC2Q96IM9 177 aa6.18□□□□□ -1.42
VPS50-219ENST00000495039 ZNF512Q96ME7 567 aaPredicted RBP6.18□□□□□ -1.42
VPS50-219ENST00000495039 WDR92Q96MX6 357 aa6.18□□□□□ -1.42
VPS50-219ENST00000495039 MLST8Q9BVC4 326 aa6.18□□□□□ -1.42
VPS50-219ENST00000495039 RIOX1Q9H6W3 641 aa6.18□□□□□ -1.42
VPS50-219ENST00000495039 POLR3BQ9NW08 1133 aaPredicted RBP6.18□□□□□ -1.42
VPS50-219ENST00000495039 PTGFRNQ9P2B2 879 aa6.18□□□□□ -1.42
VPS50-219ENST00000495039 SFMBT1Q9UHJ3 866 aa6.18□□□□□ -1.42
VPS50-219ENST00000495039 ZNHIT2Q9UHR6 403 aa6.18□□□□□ -1.42
VPS50-219ENST00000495039 KDM2BQ8NHM5 1336 aa6.18□□□□□ -1.42
VPS50-219ENST00000495039 ZBTB48P10074 688 aaPredicted RBP6.17□□□□□ -1.42
VPS50-219ENST00000495039 NBPF6Q5VWK0 638 aa6.17□□□□□ -1.42
VPS50-219ENST00000495039 C1QL3Q5VWW1 255 aa6.17□□□□□ -1.42
VPS50-219ENST00000495039 NAIF1Q69YI7 327 aaPredicted RBP6.17□□□□□ -1.42
VPS50-219ENST00000495039 OTOP1Q7RTM1 612 aa6.17□□□□□ -1.42
VPS50-219ENST00000495039 IGSF22Q8N9C0 903 aa6.17□□□□□ -1.42
VPS50-219ENST00000495039 SLC7A14Q8TBB6 771 aa6.17□□□□□ -1.42
VPS50-219ENST00000495039 ZNF764Q96H86 408 aaPredicted RBP6.17□□□□□ -1.42
VPS50-219ENST00000495039 MAML3Q96JK9 1138 aa6.17□□□□□ -1.42
VPS50-219ENST00000495039 NBPF4Q96M43 638 aa6.17□□□□□ -1.42
VPS50-219ENST00000495039 UBA6A0AVT1 1052 aaPredicted RBP6.16□□□□□ -1.42
VPS50-219ENST00000495039 GRXCR1A8MXD5 290 aa6.16□□□□□ -1.42
VPS50-219ENST00000495039 DAPK3O43293 454 aa6.16□□□□□ -1.42
VPS50-219ENST00000495039 GNAT2P19087 354 aa6.16□□□□□ -1.42
VPS50-219ENST00000495039 DCAF17Q5H9S7 520 aaPredicted RBP6.16□□□□□ -1.42
VPS50-219ENST00000495039 LRCH2Q5VUJ6 765 aa6.16□□□□□ -1.42
VPS50-219ENST00000495039 BMP8AQ7Z5Y6 402 aa6.16□□□□□ -1.42
VPS50-219ENST00000495039 ST8SIA2Q92186 375 aa6.16□□□□□ -1.42
VPS50-219ENST00000495039 SCLYQ96I15 445 aa6.16□□□□□ -1.42
VPS50-219ENST00000495039 C14orf93Q9H972 538 aaKnown RBP6.16□□□□□ -1.42
VPS50-219ENST00000495039 TCRBV16S1A1N1A0A5B0 115 aa6.15□□□□□ -1.42
VPS50-219ENST00000495039 GRID2IPA4D2P6 1211 aa6.15□□□□□ -1.42
VPS50-219ENST00000495039 B3GALT2O43825 422 aa6.15□□□□□ -1.42
VPS50-219ENST00000495039 KRT37O76014 449 aa6.15□□□□□ -1.42
VPS50-219ENST00000495039 NR4A1P22736 598 aa6.15□□□□□ -1.42
VPS50-219ENST00000495039 KIF11P52732 1056 aa6.15□□□□□ -1.42
VPS50-219ENST00000495039 NPEPPSP55786 919 aa6.15□□□□□ -1.42
VPS50-219ENST00000495039 SPIDRQ14159 915 aa6.15□□□□□ -1.42
VPS50-219ENST00000495039 TTC38Q5R3I4 469 aa6.15□□□□□ -1.42
VPS50-219ENST00000495039 BRAPQ7Z569 592 aa6.15□□□□□ -1.42
VPS50-219ENST00000495039 SIRPGQ9P1W8 387 aa6.15□□□□□ -1.42
VPS50-219ENST00000495039 NCDNQ9UBB6 729 aa6.15□□□□□ -1.42
VPS50-219ENST00000495039 PPP1R1BQ9UD71 204 aaPredicted RBP6.15□□□□□ -1.42
VPS50-219ENST00000495039 HS3ST4Q9Y661 456 aa6.15□□□□□ -1.42
VPS50-219ENST00000495039 ZAR1LA6NP61 321 aa6.14□□□□□ -1.43
VPS50-219ENST00000495039 RECQL4O94761 1208 aa6.14□□□□□ -1.43
VPS50-219ENST00000495039 KCNA6P17658 529 aa6.14□□□□□ -1.43
VPS50-219ENST00000495039 ATXN1P54253 815 aaKnown RBP6.14□□□□□ -1.43
VPS50-219ENST00000495039 ARHGAP44Q17R89 818 aa6.14□□□□□ -1.43
VPS50-219ENST00000495039 ABHD17CQ6PCB6 329 aa6.14□□□□□ -1.43
VPS50-219ENST00000495039 CMTM4Q8IZR5 234 aa6.14□□□□□ -1.43
VPS50-219ENST00000495039 CPT1CQ8TCG5 803 aa6.14□□□□□ -1.43
VPS50-219ENST00000495039 RPGRQ92834 1020 aaKnown RBP6.14□□□□□ -1.43
VPS50-219ENST00000495039 HAPLN2Q9GZV7 340 aa6.14□□□□□ -1.43
VPS50-219ENST00000495039 TOR3AQ9H497 397 aa6.14□□□□□ -1.43
VPS50-219ENST00000495039 DNAI1Q9UI46 699 aa6.14□□□□□ -1.43
VPS50-219ENST00000495039 SORCS3Q9UPU3 1222 aa6.14□□□□□ -1.43
VPS50-219ENST00000495039 MASP2O00187 686 aa6.13□□□□□ -1.43
VPS50-219ENST00000495039 TRIM24O15164 1050 aa6.13□□□□□ -1.43
VPS50-219ENST00000495039 KIR2DL3P43628 341 aa6.13□□□□□ -1.43
VPS50-219ENST00000495039 BCAR1P56945 870 aa6.13□□□□□ -1.43
VPS50-219ENST00000495039 CSRP2Q16527 193 aa6.13□□□□□ -1.43
VPS50-219ENST00000495039 TIGD2Q4W5G0 525 aa6.13□□□□□ -1.43
VPS50-219ENST00000495039 PLEKHG4Q58EX7 1191 aa6.13□□□□□ -1.43
VPS50-219ENST00000495039 HECTD2Q5U5R9 776 aa6.13□□□□□ -1.43
VPS50-219ENST00000495039 PRAMEF9Q5VWM5 478 aa6.13□□□□□ -1.43
VPS50-219ENST00000495039 APBB1IPQ7Z5R6 666 aaPredicted RBP6.13□□□□□ -1.43
VPS50-219ENST00000495039 FAM193BQ96PV7 902 aaPredicted RBP6.13□□□□□ -1.43
VPS50-219ENST00000495039 ACSS2Q9NR19 701 aa6.13□□□□□ -1.43
VPS50-219ENST00000495039 SYNPO2Q9UMS6 1093 aa6.13□□□□□ -1.43
VPS50-219ENST00000495039 MTSS1O43312 755 aa6.12□□□□□ -1.43
VPS50-219ENST00000495039 KCNQ2O43526 872 aa6.12□□□□□ -1.43
VPS50-219ENST00000495039 SYCE2Q6PIF2 218 aa6.12□□□□□ -1.43
VPS50-219ENST00000495039 NME9Q86XW9 330 aa6.12□□□□□ -1.43
VPS50-219ENST00000495039 TUBGCP5Q96RT8 1024 aa6.12□□□□□ -1.43
VPS50-219ENST00000495039 MRPL4Q9BYD3 311 aaKnown RBP6.12□□□□□ -1.43
VPS50-219ENST00000495039 PCIF1Q9H4Z3 704 aa6.12□□□□□ -1.43
VPS50-219ENST00000495039 CCDC163A0A0D9SF12 145 aa6.11□□□□□ -1.43
VPS50-219ENST00000495039 MAFGO15525 162 aa6.11□□□□□ -1.43
VPS50-219ENST00000495039 SCAF4O95104 1147 aaKnown RBP6.11□□□□□ -1.43
VPS50-219ENST00000495039 HNRNPLP14866 589 aaKnown RBP eCLIP6.11□□□□□ -1.43
VPS50-219ENST00000495039 GYPEP15421 78 aa6.11□□□□□ -1.43
VPS50-219ENST00000495039 HK1P19367 917 aa6.11□□□□□ -1.43
VPS50-219ENST00000495039 MECP2P51608 486 aaKnown RBP6.11□□□□□ -1.43
VPS50-219ENST00000495039 STRIP1Q5VSL9 837 aa6.11□□□□□ -1.43
VPS50-219ENST00000495039 FGD2Q7Z6J4 655 aa6.11□□□□□ -1.43
VPS50-219ENST00000495039 ADGRG3Q86Y34 549 aa6.11□□□□□ -1.43
VPS50-219ENST00000495039 NAF1Q96HR8 494 aaKnown RBP6.11□□□□□ -1.43
VPS50-219ENST00000495039 CYP4F11Q9HBI6 524 aa6.11□□□□□ -1.43
VPS50-219ENST00000495039 DVL2O14641 736 aa6.1□□□□□ -1.43
VPS50-219ENST00000495039 CYP17A1P05093 508 aa6.1□□□□□ -1.43
VPS50-219ENST00000495039 LAG3P18627 525 aa6.1□□□□□ -1.43
VPS50-219ENST00000495039 C21orf58P58505 322 aa6.1□□□□□ -1.43
VPS50-219ENST00000495039 TAP1Q03518 808 aa6.1□□□□□ -1.43
VPS50-219ENST00000495039 LRP10Q7Z4F1 713 aa6.1□□□□□ -1.43
VPS50-219ENST00000495039 DDX53Q86TM3 631 aaKnown RBP6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms